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AT5G02030.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : POX (plant homeobox) family protein
Curator
Summary (TAIR10)
Mutant has additional lateral organs and phyllotaxy defect. Encodes a homeodomain transcription factor. Has sequence similarity to the Arabidopsis ovule development regulator Bell1. Binds directly to the AGAMOUS cis-regulatory element. Its localization to the nucleus is dependent on the coexpression of either STM or BP.
Computational
Description (TAIR10)
REPLUMLESS (RPL); CONTAINS InterPro DOMAIN/s: Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), POX (InterPro:IPR006563), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: BEL1-like homeodomain 8 (TAIR:AT2G27990.1); Has 5109 Blast hits to 5109 proteins in 341 species: Archae - 0; Bacteria - 2; Metazoa - 2052; Fungi - 344; Plants - 2481; Viruses - 0; Other Eukaryotes - 230 (source: NCBI BLink).
Protein Annotations
BioGrid:17021eggNOG:ENOG410XPMQeggNOG:KOG0773EMBL:AJ519491EMBL:AL162508EMBL:AY084243EMBL:AY328314
EMBL:BT000779EMBL:BT020537EMBL:CP002688EnsemblPlants:AT5G02030EnsemblPlants:AT5G02030.1entrez:831745Gene3D:1.10.10.60
GeneID:831745Genevisible:Q9LZM8GO:GO:0003700GO:GO:0005634GO:GO:0005829GO:GO:0006351GO:GO:0007389
GO:GO:0010051GO:GO:0010076GO:GO:0010077GO:GO:0010089GO:GO:0010154GO:GO:0010223GO:GO:0010228
GO:GO:0043565GO:GO:0045892GO:GO:0048367GO:GO:0048457GO:GO:0048645GO:GO:0080006Gramene:AT5G02030.1
hmmpanther:PTHR11850hmmpanther:PTHR11850:SF82HOGENOM:HOG000238465InParanoid:Q9LZM8IntAct:Q9LZM8InterPro:IPR001356InterPro:IPR006563
InterPro:IPR008422InterPro:IPR009057KEGG:ath:AT5G02030OMA:LAINAMSPaxDb:Q9LZM8Pfam:PF05920Pfam:PF07526
Pfam:Q9LZM8Pfscan:PS50071PhylomeDB:Q9LZM8PIR:T48224PRIDE:Q9LZM8PRO:PR:Q9LZM8PROSITE:PS00027
PROSITE:PS50071ProteinModelPortal:Q9LZM8Proteomes:UP000006548RefSeq:NP_195823.1SMART:SM00389SMART:SM00574SMR:Q9LZM8
STRING:3702.AT5G02030.1SUPFAM:SSF46689TAIR:AT5G02030tair10-symbols:BLH9tair10-symbols:BLRtair10-symbols:HB-6tair10-symbols:LSN
tair10-symbols:PNYtair10-symbols:RPLtair10-symbols:VANUniGene:At.4802UniProt:Q9LZM8
Coordinates (TAIR10) chr5:+:395754..398872
Molecular Weight (calculated) 62010.10 Da
IEP (calculated) 7.94
GRAVY (calculated) -0.52
Length 575 amino acids
Sequence (TAIR10)
(BLAST)
001: MADAYEPYHV LQQSRRDKLR IPSLDSHFHF HPPPPPSSGG GGGVFPLADS DFLAAGGFHS NNNNNHISNP SYSNFMGFLG GPSSSSSTAV AVAGDHSFNA
101: GLSSGDVLVF KPEPLSLSLS SHPRLAYDLV VPGVVNSGFC RSAGEANAAA VTIASRSSGP LGPFTGYASI LKGSRFLKPA QMLLDEFCNV GRGIYTDKVI
201: DDDDSSLLFD PTVENLCGVS DGGGGDNGKK KSKLISMLDE VYKRYKQYYE QLQAVMGSFE CVAGLGHAAP YANLALKALS KHFKCLKNAI TDQLQFSHNN
301: KIQQQQQCGH PMNSENKTDS LRFGGSDSSR GLCSAGQRHG FPDHHAPVWR PHRGLPERAV TVLRAWLFDH FLHPYPTDTD KLMLAKQTGL SRNQVSNWFI
401: NARVRVWKPM VEEIHMLETR QSQRSSSSSW RDERTSTTVF PDNSNNNPSS SSAQQRPNNS SPPRRARNDD VHGTNNNNSY VNSGSGGGSA VGFSYGIGSS
501: NVPVMNSSTN GGVSLTLGLH HQIGLPEPFP MTTAQRFGLD GGSGDGGGGY EGQNRQFGRD FIGGSNHQFL HDFVG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)