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AT5G01940.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 1.000
ASURE: cytosol
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : eukaryotic translation initiation factor 2B family protein / eIF-2B family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
eukaryotic translation initiation factor 2B family protein / eIF-2B family protein; FUNCTIONS IN: translation initiation factor activity; INVOLVED IN: translational initiation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Translation initiation factor IF2/IF5, N-terminal (InterPro:IPR016189), Translation initiation factor IF2/IF5 (InterPro:IPR002735); BEST Arabidopsis thaliana protein match is: eukaryotic translation initiation factor 2 beta subunit (TAIR:AT5G20920.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:COG1601eggNOG:KOG2768EMBL:AL162351EMBL:CP002688
EnsemblPlants:AT5G01940EnsemblPlants:AT5G01940.1entrez:831786Gene3D:3.30.30.50
GeneID:831786GO:GO:0003743Gramene:AT5G01940.1hmmpanther:PTHR23001
hmmpanther:PTHR23001:SF3HOGENOM:HOG000153200InterPro:IPR002735InterPro:IPR016189
KEGG:ath:AT5G01940KO:K03238OMA:SSWVSKFPfam:PF01873
PhylomeDB:Q9LZV2PIR:T48215Proteomes:UP000006548Reactome:R-ATH-156827
Reactome:R-ATH-382556Reactome:R-ATH-72695Reactome:R-ATH-72702Reactome:R-ATH-72731
RefSeq:NP_195814.1SMART:SM00653SMR:Q9LZV2STRING:3702.AT5G01940.1
SUPFAM:SSF100966TAIR:AT5G01940UniGene:At.33482UniProt:Q9LZV2
Coordinates (TAIR10) chr5:-:363594..364769
Molecular Weight (calculated) 26549.10 Da
IEP (calculated) 5.83
GRAVY (calculated) -0.42
Length 231 amino acids
Sequence (TAIR10)
(BLAST)
001: MDLQQKQACW KLELEVIDND SSWVSKFDPS KKKKKKKQKP LIREDDIFFQ NGGHFTEDNL PDCQSSRKFE PDYGYKELLS MVFDRLREED VEVSTERPRT
101: VMMPPQLLAE GTITVCLNFA DLCRTMHRKP DHVMKFLLAQ METKVSLNKQ QRLEIKGLVS SKDFQAVFRK YIDAFVICVC CKSPDTALAE EGNGLFNLRC
201: ETGKDEDKLV SFESVLVQCG LVAPVDIPNL L
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)