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AT5G01880.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 0.735
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : RING/U-box superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT3G10910.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG41121N2eggNOG:KOG0800EMBL:AL162351EMBL:BT010682EMBL:BT010973EMBL:CP002688EnsemblPlants:AT5G01880
EnsemblPlants:AT5G01880.1entrez:831691ExpressionAtlas:Q9LZV8Gene3D:3.30.40.10GeneID:831691Genevisible:Q9LZV8GO:GO:0008270
GO:GO:0016021GO:GO:0016567Gramene:AT5G01880.1hmmpanther:PTHR14155hmmpanther:PTHR14155:SF74HOGENOM:HOG000237642InParanoid:Q9LZV8
InterPro:IPR001841InterPro:IPR013083KEGG:ath:AT5G01880OMA:SILRCAMPaxDb:Q9LZV8Pfam:PF13639Pfam:Q9LZV8
Pfscan:PS50089PhylomeDB:Q9LZV8PIR:T48209PRIDE:Q9LZV8PRO:PR:Q9LZV8PROSITE:PS50089ProteinModelPortal:Q9LZV8
Proteomes:UP000006548RefSeq:NP_195808.1SMART:SM00184SMR:Q9LZV8SUPFAM:SSF57850TAIR:AT5G01880TMHMM:TMhelix
UniGene:At.33488UniGene:At.70718UniPathway:UPA00143UniProt:Q0WP64UniProt:Q9LZV8
Coordinates (TAIR10) chr5:+:339017..339496
Molecular Weight (calculated) 16794.30 Da
IEP (calculated) 6.84
GRAVY (calculated) 0.17
Length 159 amino acids
Sequence (TAIR10)
(BLAST)
001: MHRLLLESHG GGNETSGSGG GDGYTRDMNF DANMVIILAA LLCALILALG LNSILRCAMR CGFGLSSSAA AGTVADRAGL KKRELKKFPV AEYGSGEVKI
101: AATECAICLG EFADGERVRV LPPCNHSFHM SCIDTWLVSH SSCPNCRHSL IEVHVAGSE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)