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AT5G01750.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
golgi 0.994
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26781341 (2016): plasma membrane
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi
  • PMID:22215637 (2012): plasma membrane
  • PMID:19334764 (2009): plasma membrane
  • PMID:15574830 (2004): plasma membrane
  • PMID:15028209 (2004): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Protein of unknown function (DUF567)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Protein of unknown function (DUF567); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF567 (InterPro:IPR007612); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF567) (TAIR:AT1G33840.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
EnsemblPlants:AT5G01750EnsemblPlants:AT5G01750.1entrez:831684hmmpanther:PTHR31087hmmpanther:PTHR31087:SF11Pfam:PF04525
Coordinates (TAIR10) chr5:+:290034..290685
Molecular Weight (calculated) 19500.60 Da
IEP (calculated) 8.76
GRAVY (calculated) -0.24
Length 174 amino acids
Sequence (TAIR10)
(BLAST)
001: MEQPYVYAYP QGSGPSGAPT PQAGGVVVDP KYCAPYPIDM AIVRKMMSLT DGNFVITDVN GNLLFKVKEP VFGLHDKRVL LDGSGTPVVT LREKMVSMHD
101: RWQVFRGGST DQRDLLYTVK RSSMLQLKTK LDVFLGHNKD EKRCDFRVKG SWLERSCVVY AGESDAIVAQ VYYL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)