AT5G01730.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.977 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : SCAR family protein 4 | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a member of the SCAR family.These proteins are part of a complex (WAVE) complex.The SCAR subunit activates the ARP2/3 complex which in turn act as a nucleator for actin filaments. | ||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
SCAR family protein 4 (SCAR4); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: positive regulation of actin nucleation; LOCATED IN: SCAR complex, chloroplast, plastoglobule; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: SCAR homolog 2 (TAIR:AT2G38440.1); Has 1330 Blast hits to 874 proteins in 188 species: Archae - 2; Bacteria - 349; Metazoa - 454; Fungi - 169; Plants - 213; Viruses - 0; Other Eukaryotes - 143 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:273019..277561 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 128625.00 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.29 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.68 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 1170 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MALTRYQIRN EYGLADKELY QSADKEDPEA LLEAASMAGL VGVLRQLGDL SEFAAEVFHC LHEQLMTTAA RGHGLAMRLQ HLEADFPSVE IPILSQTDHS 0101: TFFYEPGLEW HSDLQTKEDL ISPRNLPRCI MDSYEECHGP PQLFLLDKFD VAGSGSCLKR YSDPSLLKTH TTSAVVATSK LGKDKRLRQS KKKGSHTTIK 0201: ETPEDSRTSH AKLHQLFFLE HVENGHRNPE FHVKLKRRQL NGPPINSSSG ASYMEKFLKN SSPYCERVHG TMDQSSPAME TEVTVCSEQE DLPIPSLVYS 0301: NSGGTRKYNE MEIESIAGHE ILEIPFVPHE ITVNEKSPVV CLESSSSVNL CCKTNNDADS PASTESEVKE AGSDDKAGCD HGFPGFGQPQ ICTNAEVNQT 0401: EVLTQFSNVL RHSPEEGESS LLCTDIQRAS PESKPHKAEE AAVDLDESFS QMTPDIDSAG MGTLEILQTP FSLSCYESPA NLPEDSGSHL ELQSNKANAE 0501: ACEVFEVRRD PMLNISPETH LLKVTQVPQD AYEGGTNDVH SQHVFSVETA SEISVSALVE DQFSSITNQE IEALESEDIS SEAGHFIPDT KKSLNETSVA 0601: LESDFLLPNH YISTFDNFED LSLSADAQDY AAPKEDETNS QDGSSMNPAQ SKHISTSEIS SENGTLMSDT PRDLHTGYGS LSASSCLEDG LANPDLAEIS 0701: SYSGQEDPQT MSIVSDDSSD PEVPIPDGTC FAGDVDHDNQ TGLNNKAIET VPQKELETIS DPQESLLGTE ECLSSEYCLQ IQNQRQESPS ETGSANSRTS 0801: SDESPPTQNG SVGVQSSPLD VFPSSITEIE ALHAPYQEIF TSLNDHISES VLSKGLTDEE DFLNVSPESI LPLSTSLHET PQANPEITPP LPPLPPTQWW 0901: MGKLVESTEM PSLAGSGNNS FNIQRDENTQ NGSVQANEAQ YPSEVSVTDG ENHNFHIYTE ESKATEEQSP SGVNGTSDTY MESKHKCLNR TPEDSFSLAE 1001: SAQGLEADWR TEAMALEWFS QNLREHNNPH PAKLEEEEPQ VDHPLEKPGQ TKFRQTLRDN NSYNQNQKAG KLKRDEDTLV IGIDRSMLRK VSEGNRTHVG 1101: ARVDENDSLL EIIRSKSFNL RPADASGRPN FQVAVPKTNL KVAAILEKAN TLRQAMAGSD DEHDSDSWSE |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)