AT5G01700.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.988 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Protein phosphatase 2C family protein | ||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Protein phosphatase 2C family protein; FUNCTIONS IN: protein serine/threonine phosphatase activity, catalytic activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C-related (InterPro:IPR001932), Protein phosphatase 2C (InterPro:IPR015655), Protein phosphatase 2C, N-terminal (InterPro:IPR014045); BEST Arabidopsis thaliana protein match is: Protein phosphatase 2C family protein (TAIR:AT3G02750.2); Has 5490 Blast hits to 5489 proteins in 289 species: Archae - 0; Bacteria - 8; Metazoa - 1364; Fungi - 619; Plants - 2389; Viruses - 5; Other Eukaryotes - 1105 (source: NCBI BLink). | ||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:260848..262345 | ||||||||
| Molecular Weight (calculated) | 37046.90 Da | ||||||||
| IEP (calculated) | 6.00 | ||||||||
| GRAVY (calculated) | -0.31 | ||||||||
| Length | 333 amino acids | ||||||||
| Sequence (TAIR10) (BLAST) |
001: MSIKQGKKGI NQDAMTVWEN FGGEEDTIFC GVFDGHGPMG HKISRHVCEN LPSRVHSKIR SSKSAGDENI ENNSSQSQEE LFREFEDILV TFFKQIDSEL 101: GLDSPYDSFC SGTTAVTVFK QADCLVIANL GHSRAVLGTR SKNSFKAVQL TVDLKPCVQR EAERIVSCKG RVFAMEEEPD VYRVWMPDDD CPGLAMSRAF 201: GDFCLKDYGL VCIPDVFCRK VSREDEFVVL ATDGIWDVLS NEEVVKVVGS CKDRSVAAEM LVQRAARTWR TKFPASKADD CAVVVLYLNH RPYPREGNVS 301: RAISTISWRS NKSNNECYGA APLSPLGLSQ RVS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)