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AT5G01660.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
CONTAINS InterPro DOMAIN/s: Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Development/cell death domain (InterPro:IPR013989), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: DCD (Development and Cell Death) domain protein (TAIR:AT3G11000.1); Has 16133 Blast hits to 7053 proteins in 482 species: Archae - 40; Bacteria - 1227; Metazoa - 10756; Fungi - 311; Plants - 1896; Viruses - 673; Other Eukaryotes - 1230 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG4110X8DeggNOG:KOG1072EMBL:CP002688EnsemblPlants:AT5G01660
EnsemblPlants:AT5G01660.1entrez:830423Gene3D:2.130.10.80GeneID:830423
Gramene:AT5G01660.1hmmpanther:PTHR24412hmmpanther:PTHR24412:SF223InParanoid:F4K9G6
InterPro:IPR006652InterPro:IPR013989InterPro:IPR015916KEGG:ath:AT5G01660
PaxDb:F4K9G6Pfam:PF01344Pfam:PF10539Pfscan:PS51222
PRIDE:F4K9G6PROSITE:PS51222ProteinModelPortal:F4K9G6Proteomes:UP000006548
RefSeq:NP_195786.4SMART:SM00612SMART:SM00767SMR:F4K9G6
SUPFAM:0052715TAIR:AT5G01660UniGene:At.54675UniProt:F4K9G6
Coordinates (TAIR10) chr5:-:244504..248442
Molecular Weight (calculated) 72562.20 Da
IEP (calculated) 5.13
GRAVY (calculated) -0.48
Length 656 amino acids
Sequence (TAIR10)
(BLAST)
001: MAQRRGKFSF RNLTKSQLGG VVFGCTKNTI KECMSKQLFG LPSNHYPYVQ KIDIGLPLFL FNYSDRTLHG IFEAAGCGQL NFDPYGWTSD GSERTSYPAQ
101: VPISVRLQCE PLSEEKFKPA IADNYYSSHH FWFELDHFQT RKLTCLLTSF AVKPKPPMNT PNTRQIFRLI SSSEKKENSD EVKPSENEPV GSLEVSLSSG
201: GESDSSAAAS HPGFSENHPD VQNPKQIDKD HVLEKLKDLV FSHDEHGDNS LTETVEQANI PTCKNLEDRD TLEEETCSEG KIDGSCLVSS PLPHTISQLM
301: HEVKELRACG LENSTKICYL EEKLDKAHKE IYQLTERCNM LESISGPLIT KAGGSDLEIH SPDDTSLDPT EAILLLGGFD KDSETWLSSV QSYFPSRNVV
401: KAHSSMSCIR SNASVAKLDG KIYVFGGDDG GRGWTNSAES FNQTDGQWSL CPPLNERKGS LGGATLDGKI FAIGGGNGMV SFSDVEMLDP DIGRWIRTRS
501: MGQERFAVAS VEHKSSIYAV GGYDGKEYLN TAERFDPREH SWMNIASMKS RRGCHSLVVL NEKLYAIGGF DGETMVSSVE IYEPRTGTWM TGEPMKDLRG
601: YSAVAVVKDS IYVIGGYKGE EDDILDTVEC FKEGEGWKNV PSSSIGRRCF LSAVAL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)