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AT5G01610.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26572690 (2016): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Protein of unknown function, DUF538
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Protein of unknown function, DUF538; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF538 (InterPro:IPR007493); BEST Arabidopsis thaliana protein match is: Protein of unknown function, DUF538 (TAIR:AT3G08890.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioGrid:16994DNASU:831718eggNOG:ENOG410JVCVeggNOG:ENOG4110611EMBL:AK227765EMBL:AL161946EMBL:AY086139
EMBL:BT004797EMBL:CP002688EnsemblPlants:AT5G01610EnsemblPlants:AT5G01610.1entrez:831718EvolutionaryTrace:Q9M015Gene3D:2.30.240.10
GeneID:831718Genevisible:Q9M015Gramene:AT5G01610.1hmmpanther:PTHR31676hmmpanther:PTHR31676:SF0HOGENOM:HOG000237969InParanoid:Q9M015
InterPro:IPR007493KEGG:ath:AT5G01610OMA:NKTRNRDPaxDb:Q9M015PDB:1YDUPDBsum:1YDUPfam:PF04398
Pfam:Q9M015PhylomeDB:Q9M015PIR:T48182PRIDE:Q9M015PRO:PR:Q9M015ProteinModelPortal:Q9M015Proteomes:UP000006548
RefSeq:NP_195781.1SMR:Q9M015SUPFAM:0051283SUPFAM:SSF141562TAIR:AT5G01610UniGene:At.33533UniProt:Q9M015
Coordinates (TAIR10) chr5:+:231075..231994
Molecular Weight (calculated) 19070.00 Da
IEP (calculated) 9.67
GRAVY (calculated) -0.42
Length 170 amino acids
Sequence (TAIR10)
(BLAST)
001: MDQIFNKVGS YWLGQKANKQ FDSVGNDLNS VSTSIEGGTK WLVNKIKGKM QKPLPELLKE YDLPIGIFPG DATNYEFDEE TKKLTVLIPS ICEVGYKDSS
101: VLKFTTTVTG HLEKGKLTDV EGIKTKVMIW VKVTSISTDA SKVYFTAGMK KSRSRDAYEV QRNGLRVDKF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)