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AT5G01590.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:24872594 (2014): plastid plastid envelope plastid inner membrane
  • PMID:22923678 (2012): plastid
  • PMID:20061580 (2010): plastid plastid envelope
  • PMID:18431481 (2008): plastid
  • PMID:12938931 (2003): plastid
  • PMID:12766230 (2003): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 60 Blast hits to 59 proteins in 31 species: Archae - 0; Bacteria - 20; Metazoa - 1; Fungi - 2; Plants - 33; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IHJJeggNOG:ENOG4111F7BEMBL:AL161946EMBL:AY050767EMBL:BT008696EMBL:CP002688EnsemblPlants:AT5G01590
EnsemblPlants:AT5G01590.1entrez:830369GeneID:830369Genevisible:Q7Y1W1GO:GO:0008565GO:GO:0009507GO:GO:0009536
GO:GO:0009706GO:GO:0009941GO:GO:0045037Gramene:AT5G01590.1hmmpanther:PTHR37755HOGENOM:HOG000006363InParanoid:Q7Y1W1
InterPro:IPR025640iPTMnet:Q7Y1W1KEGG:ath:AT5G01590ncoils:CoilOMA:ANDGVWPPaxDb:Q7Y1W1Pfam:PF14237
Pfam:Q7Y1W1PhylomeDB:Q7Y1W1PIR:T48180PRIDE:Q7Y1W1PRO:PR:Q7Y1W1ProteinModelPortal:Q7Y1W1Proteomes:UP000006548
RefSeq:NP_568092.4STRING:3702.AT5G01590.1TAIR:AT5G01590TCDB:3.A.9.1.2UniGene:At.4694UniGene:At.68146UniProt:Q7Y1W1
Coordinates (TAIR10) chr5:+:224249..226620
Molecular Weight (calculated) 61627.90 Da
IEP (calculated) 5.32
GRAVY (calculated) -0.83
Length 527 amino acids
Sequence (TAIR10)
(BLAST)
001: MSSMNFNPFQ NWFEKPPNPV PSINFVSLAD SFFPKSQSPN FASIGLPKFS KKSPKPETAG TDEPGPYKQI AEQFLWECEN IPDYRHTPEV DKLLNEDPVF
101: EKKENPSTEE IEAEQKWWES FRASPVVQFM TRAEEIADDM NKMELEDNDT PYRKEDKDYW RAIPHVPGFD GRPMPRKAIK SKEESDDKFW DFMKQFLFGL
201: WGFRQRPYPP GRPIDVAQAI GYKRLEKRYY DFIMKTGGWW YKDRLGRSRG PCEIITLKTA YGAGIIDRDT FIWGEDMDEW APIHMVYGLE PAIATWEVRL
301: GAAATAFLHK LQKGIPPWVP LKGREPKTYK QLQKEAIESK KRDMAVLEAN GGVWPGVRTP SHALFLWASG SELTTVLESD HMPNKFIPKQ LRLELAKVIP
401: GLRPWEVISI EQAMDQISYG GEWYREPLGT YTTGPPYIRE WNRSVMRLFR IFYNLSVRVG QKLERTVPGF DTIMDKVQKD YDKRIARRMK RREEELREED
501: LKHYSGRTDE DEEEEEEEDD DSNSKKD
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)