AT5G01550.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : lectin receptor kinase a4.1 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes LecRKA4.2, a member of the lectin receptor kinase subfamily A4 (LecRKA4.1 At5g01540; LecRKA4.2 At5g01550; LecRKA4.3 At5g01560). Together with other members of the subfamily, functions redundantly in the negative regulation of ABA response in seed germination. | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
lectin receptor kinase a4.1 (LECRKA4.2); FUNCTIONS IN: protein serine/threonine kinase activity, binding, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: abscisic acid mediated signaling pathway, seed germination; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Legume lectin, beta chain (InterPro:IPR001220), Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719), Concanavalin A-like lectin/glucanase (InterPro:IPR008985); BEST Arabidopsis thaliana protein match is: lectin receptor kinase a4.3 (TAIR:AT5G01560.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:214517..216583 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 75989.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.97 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.23 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 688 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MLVLFLLLTI PTRAQRTTTE TPKTEFIFRG FSGNQSNIVT TGAATIKLDG LLRLTDRNSN VTGTSFYHKP VRLLETNTSS TNSTIRSFST SFVFVIIPTS 101: SSNGGFGFTF TLSPTPDRTG AESAQYLGLL NKANDGNSTN HVFAVEFDTV QGFKDGADRT GNHIGLNFNS LTSDVQEPVV YYDNEDPNRK EDFPLQSGDP 201: IRAILDYDGP TQTLNLTVYP ANLKSRPVRP LISRPVPKLS QIVQEEMYVG FTAATGRDQS SAHYVMGWSF SSGGDLLTED TLDLLELPRP PPNTAKKRGY 301: NSQVLALIVA LSGVTVILLA LLFFFVMYKK RLQQGEVLED WEINHPHRLR YKDLYAATDG FKENRIVGTG GFGTVFRGNL SSPSSDQIAV KKITPNSMQG 401: VREFIAEIES LGRLRHKNLV NLQGWCKQKN DLLLIYDYIP NGSLDSLLYS RPRQSGVVLS WNARFKIAKG IASGLLYLHE EWEKVVIHRD IKPSNVLIED 501: DMNPRLGDFG LARLYERGSQ SNTTVVVGTI GYMAPELARN GKSSSASDVF AFGVLLLEIV SGRRPTDSGT FFLADWVMEL HARGEILHAV DPRLGFGYDG 601: VEARLALVVG LLCCHQRPTS RPSMRTVLRY LNGDDDVPEI DNDWGYSDSS RSDLGSNFEG YVSSDRASSS VPSFSVTRVS SSSVISGR |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)