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AT5G01530.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:27943495 (2017): mitochondrion
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25641898 (2015): plasma membrane
  • PMID:25402197 (2015): plastid plastid thylakoid plastid thylakoid membrane
  • PMID:24872594 (2014): plastid plastid thylakoid
  • PMID:23851315 (2013): plastid
  • PMID:23667806 (2013): plastid plastid thylakoid
  • PMID:23549413 (2013): plastid
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:23390424 (2013): plastid plastid envelope
  • PMID:22215637 (2012): plasma membrane
  • PMID:21531424 (2011): plastid
  • PMID:20061580 (2010): plastid plastid thylakoid
  • PMID:19334764 (2009): plasma membrane
  • PMID:18633119 (2008): plastid plastid thylakoid
  • PMID:18431481 (2008): plastid plastid thylakoid
  • PMID:16414959 (2006): plastid plastid stroma plastoglobules
  • PMID:15322131 (2004): plastid
  • PMID:15028209 (2004): plastid
  • PMID:14729914 (2004): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : light harvesting complex photosystem II
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
light harvesting complex photosystem II (LHCB4.1); FUNCTIONS IN: chlorophyll binding; INVOLVED IN: response to blue light, response to red light, response to far red light, photosynthesis; LOCATED IN: in 6 components; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Chlorophyll A-B binding protein (InterPro:IPR001344); BEST Arabidopsis thaliana protein match is: light harvesting complex photosystem II (TAIR:AT3G08940.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IEXDeggNOG:ENOG410YYUXEMBL:AK226459EnsemblPlants:AT5G01530EnsemblPlants:AT5G01530.1entrez:830325ExpressionAtlas:Q0WW97
Gene3D:1.10.3460.10GeneID:830325GO:GO:0009507GO:GO:0009522GO:GO:0009765GO:GO:0016021GO:GO:0016168
GO:GO:0018298GO:GO:0046872Gramene:AT5G01530.1hmmpanther:PTHR21649hmmpanther:PTHR21649:SF6IntAct:Q0WW97InterPro:IPR001344
InterPro:IPR022796InterPro:IPR023329KEGG:ath:AT5G01530KO:K08915MINT:MINT-8360516OMA:TDRPLWYPANTHER:PTHR21649
PaxDb:Q0WW97Pfam:PF00504Pfam:Q07473PhylomeDB:Q0WW97PRIDE:Q0WW97ProteinModelPortal:Q0WW97RefSeq:NP_195773.1
SMR:Q0WW97STRING:3702.AT5G01530.1SUPFAM:0043399SUPFAM:SSF103511TAIR:AT5G01530tair10-symbols:LHCB4.1UniGene:At.23015
UniGene:At.23659UniGene:At.23691UniGene:At.24017UniGene:At.75201UniProt:Q07473UniProt:Q0WW97
Coordinates (TAIR10) chr5:+:209084..210243
Molecular Weight (calculated) 31141.10 Da
IEP (calculated) 6.03
GRAVY (calculated) -0.02
Length 290 amino acids
Sequence (TAIR10)
(BLAST)
001: MAATSAAAAA ASSIMGTRVA PGIHPGSGRF TAVFGFGKKK AAPKKSAKKT VTTDRPLWYP GAISPDWLDG SLVGDYGFDP FGLGKPAEYL QFDIDSLDQN
101: LAKNLAGDVI GTRTEAADAK STPFQPYSEV FGIQRFRECE LIHGRWAMLA TLGALSVEWL TGVTWQDAGK VELVDGSSYL GQPLPFSIST LIWIEVLVIG
201: YIEFQRNAEL DSEKRLYPGG KFFDPLGLAA DPEKTAQLQL AEIKHARLAM VAFLGFAVQA AATGKGPLNN WATHLSDPLH TTIIDTFSSS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)