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AT5G01520.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.976
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : RING/U-box superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT3G47160.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XRM0eggNOG:KOG1039EMBL:AL161946EMBL:AY050835EMBL:AY091165EMBL:CP002688EMBL:DQ059129
EnsemblPlants:AT5G01520EnsemblPlants:AT5G01520.1entrez:831747ExpressionAtlas:Q9M022Gene3D:3.30.40.10GeneID:831747GO:GO:0005829
GO:GO:0008270Gramene:AT5G01520.1hmmpanther:PTHR15315hmmpanther:PTHR15315:SF31HOGENOM:HOG000241127InterPro:IPR001841InterPro:IPR013083
InterPro:IPR017907KEGG:ath:AT5G01520OMA:RNWRARSPfam:PF13920Pfscan:PS50089PhylomeDB:Q9M022PIR:T48173
PROSITE:PS00518PROSITE:PS50089Proteomes:UP000006548RefSeq:NP_195772.1scanprosite:PS00518SMART:SM00184SMR:Q9M022
STRING:3702.AT5G01520.1SUPFAM:SSF57850TAIR:AT5G01520UniGene:At.22936UniProt:Q9M022
Coordinates (TAIR10) chr5:+:206797..208399
Molecular Weight (calculated) 28051.00 Da
IEP (calculated) 8.24
GRAVY (calculated) -0.36
Length 242 amino acids
Sequence (TAIR10)
(BLAST)
001: MRKSFKDSLK ALEADIQFAN TLASEYPEEY DGGYVQMRLS YSPAAHLFLF LLQWTDCHFA GALGLLRILI YKAYVDGKTT MSLHERKTSI REFYDVLFPS
101: LLQLHGGITD VEERKQKEIC DKRYRKKDRT DKGKMSEIDL EREEECGICL EIRNKVVLPT CNHSMCINCY RNWRARSQSC PFCRGSLKRV NSGDLWIYTC
201: SAEIADLPAI YKENLKRLLI YIDKLPLVTS DPNLVPYAPL PR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)