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AT5G01510.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
mitochondrion 0.997
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Protein of unknown function, DUF647
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
ROOT UV-B SENSITIVE 5 (RUS5); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF647 (InterPro:IPR006968); BEST Arabidopsis thaliana protein match is: Protein of unknown function, DUF647 (TAIR:AT3G45890.1); Has 426 Blast hits to 424 proteins in 125 species: Archae - 0; Bacteria - 2; Metazoa - 111; Fungi - 69; Plants - 183; Viruses - 0; Other Eukaryotes - 61 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XU74eggNOG:KOG4249EMBL:AL161946EMBL:BT050411EMBL:CP002688EnsemblPlants:AT5G01510EnsemblPlants:AT5G01510.1
entrez:831819GeneID:831819Genevisible:B6IDH3Gramene:AT5G01510.1hmmpanther:PTHR12770hmmpanther:PTHR12770:SF24HOGENOM:HOG000076883
InParanoid:B6IDH3InterPro:IPR006968KEGG:ath:AT5G01510OMA:LHPQISFPANTHER:PTHR12770PaxDb:B6IDH3Pfam:B6IDH3
Pfam:PF04884PhylomeDB:B6IDH3PIR:T48172PRIDE:B6IDH3PRO:PR:B6IDH3Proteomes:UP000006548RefSeq:NP_195771.2
TAIR:AT5G01510tair10-symbols:RUS5UniGene:At.50415UniProt:B6IDH3
Coordinates (TAIR10) chr5:+:201702..205151
Molecular Weight (calculated) 57616.00 Da
IEP (calculated) 7.15
GRAVY (calculated) -0.14
Length 509 amino acids
Sequence (TAIR10)
(BLAST)
001: MYCTLRFPLP LHIPQTRTMT SCQPKRRRVE HLRCSAQPSS IREDDEDADD RRVGVERRIS IVVERYGNGT SKRYFLDDDD SPLQGILEER ETKPDNNSQS
101: SNSSETNILW LPDVVRDFVF PSGFPGSVSD DYLDYMLWQF PTNITGWICN VLVTSSLLKA VGVGSFSGTS AAATAAASAA AIRWVSKDGI GALGRLLIGG
201: RFGSLFDDDP KQWRMYADFI GSAGSFFDLA TQLYPSQFLL LASTGNLAKA VARGLRDPSF RVIQNHFAIS GNLGEVAAKE EVWEVAAQLI GLGFGILIID
301: TPGLVKSFPF VLLTWTSIRL VHLWLRYQSL AVLQFNTVNL KRARIIVESH VVHSVVPGYV DCNKRENILL WQRFMKPRII FGVSLEELSG LEKSVSKVKA
401: LLKMYTKEKY ILTLNKLNKD TEFSVSFKVN ATSRDVLRCL WQAYWLEENM EESFKDKDSV FHWLKQSLSE MDNKFDDFLF KLDTAGWNLR ESNLKVPNQV
501: LIDQESIPF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)