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AT5G01450.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
vacuole 0.959
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:22897245 (2012): Golgi Golgi apparatus Golgi membrane
  • PMID:22897245 (2012): plant-type vacuole plant-type vacuole membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : RING/U-box superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT2G38185.2); Has 1494 Blast hits to 1490 proteins in 181 species: Archae - 0; Bacteria - 0; Metazoa - 838; Fungi - 48; Plants - 298; Viruses - 88; Other Eukaryotes - 222 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG41101VReggNOG:KOG4275EMBL:AK229004EMBL:BT015052EMBL:BT015858EMBL:CP002688EnsemblPlants:AT5G01450
EnsemblPlants:AT5G01450.1entrez:831860Gene3D:3.30.40.10GeneID:831860GO:GO:0007067GO:GO:0008270GO:GO:0016021
Gramene:AT5G01450.1hmmpanther:PTHR12183hmmpanther:PTHR12183:SF16HOGENOM:HOG000005728InterPro:IPR001841InterPro:IPR013083InterPro:IPR032008
InterPro:IPR032010KEGG:ath:AT5G01450OMA:YLCAICYPfam:PF13920Pfam:PF16040Pfam:PF16041Pfscan:PS50089
PhylomeDB:Q6DBH0PROSITE:PS50089Proteomes:UP000006548RefSeq:NP_195765.3SMR:Q6DBH0STRING:3702.AT5G01450.1SUPFAM:SSF57850
TAIR:AT5G01450TMHMM:TMhelixUniGene:At.4685UniProt:Q6DBH0
Coordinates (TAIR10) chr5:-:183693..186244
Molecular Weight (calculated) 49279.80 Da
IEP (calculated) 5.02
GRAVY (calculated) -0.19
Length 444 amino acids
Sequence (TAIR10)
(BLAST)
001: MSLPDSLPSS SSSPPVTREE TGFHRFEHHG NDSGFDHRDR PPWNRSEYDY RHGSVVASEN VRNNSTSEDP WSCVVVVATF CIFVSMTLIL GLYGTTNVWL
101: GPNSSFLIKP TSVFVQNVIV EELGNKGSGL ILYGLNQAPQ LDVLTKWSEV HYLAVPNDSY KYWIQYLNKG SRVKVSYNVE SVGSSLYLVI AQGVDGLSEW
201: VQDPTRPDTT LSWHIISDSG YIEQDITKSS SYYVAVGNVY LNEVKATIDI QVEGVLYDTT NAYYNCSFPN DKCTLSVPLF GTNAAVLTSP GPKLNNSKNE
301: FCAKLSYEPR WIAYIVCMGV VTALLLIVSS LFNKRQPVTE DETVDENDDV APLIPGKDDD NSSWCSSYSS ILTSTEELEG AHGEGHSSTR YLCAICYDAP
401: RDCFFLSCGH CVACFQCGTR IAETSGFCPV CRKKIRKVKK IFNV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)