AT5G01400.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
|||||||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : HEAT repeat-containing protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a Symplekin/Pta1 homologue which would have the potential to interact with either ESP1 or AtCstF64. | ||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
ENHANCED SILENCING PHENOTYPE 4 (ESP4); FUNCTIONS IN: binding; INVOLVED IN: posttranscriptional gene silencing by RNA, RNA processing; LOCATED IN: mRNA cleavage and polyadenylation specificity factor complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Symplekin tight junction protein C-terminal (InterPro:IPR022075), Armadillo-type fold (InterPro:IPR016024), Protein of unknown function DUF3453 (InterPro:IPR021850); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G27595.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr5:-:162803..171072 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 159487.00 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.66 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.21 | ||||||||||||||||||||||||||||||||||||||||
| Length | 1467 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MASYSRARLK DLANSAKSAT ELPPKLQRLR YMRRDLQKDD SVFPTELLPH LFDLLSDQFG AVRKFVAEIL GEIGLKYVEL IPEIVPLLIK SLEDETPAVA 0101: RQVIACGADL FRSTLERVAV QGLHSSELND LLESSWTWLI KFKDEICSVA FKQGNSGVKL CAMKFVEALI LLYTPHEGIE ADFNISILRG GHPVLKIGDL 0201: SIEASQKLGL LLDQLRHPAA KSLNSSTIIV LINSLSSVAK KRPAYCGRIL PVLLSLDPLS FLKGVYAAAT NLALKTVFLS CLKCTHPAAA PDRLTSALKE 0301: IEGGGQAAKA KDLFYKTNGS IQDKDSVEDT KVSVEENPLC ASSDVAESNL SRKRSGSEYN IDLNGDASDG KRARITPSVS EESTDGLNGN DGVSLPRVAS 0401: TSTGPSDSRG VSDSGPAQQL VGLFGTLVSQ GEKAIGSLEI LISSISADLL TDVVMANMHN IPPNCSSYAD GTDELVMNMC IVGSDAQIKY PPSFVAGVLS 0501: LSTAFPPIAA LINPHNEDEE VYSVHVDQQM FPAEDARTPP GLLATCDTSF PENEESNTVS PQNVHYIGNR ESGIPGLESS AQHDGSGALV TNVLSSTNVE 0601: AASKNQNASF SGKLLVDVIP SMSVDKLEEF SPKAVGTVAS ASQFVLPKIS APVVDLSDEE KDSLQKLVFL RIVEAYKQIS MSGGSQLRFS LLAHLGVEFP 0701: SELDPWKILQ EHVLSDYLNH EGHELTVRVL YRLYGEAEAE QDFFSSTTAA SAYESFLLTV AEALRDSFPP SDKSLSKLLG DSPHLPKSVL MLLESFCCPG 0801: SGEVEKDLQH GDRVTQGLSA VWSLILMRPG IRNDCLNIAL QSAVHHLEEI RMKAIRLVAN KLYSLSFITE QIEEFAKDRL FSVVSDDCDK MDLDLKSPPN 0901: KPQHSISGMS METPSEATSS STSVTEAQRC LSLYFALCTK VLRIFTILRL MTNLVFNIYK NASDPVKQAI HLQIPILVRT MGSSSELLKI IADPPSGSDN 1001: LLIQVLQTLT EGPTPSSELI LTIRKLFDTR IKDVEILFPI LPFLPRDDVL RIFPHMVNLP MEKFQVALSR VLQGSSQSGP VLSPSEALIA IHSIDPARDG 1101: IPLKQVTDAC NTCFAQRQTF TQQVLAGVLN QLVQQIPLPM LFMRTVLQAI GAFPALSDFI LEILSRLVSK QIWKYPKLWV GFLKCTQTTQ PQSYKVLLQL 1201: PPLQLGNALT KIPALRAPLT AHASQPEIQS SLPRSTLAVL GLVPDSQGTQ TSQVQANETQ TSQEQQQQQA SEPQQTSQSQ QVSVPLSHSQ VDHQEPSQVV 1301: ASQSQSSPIG TVQSAMSQSQ NSPIDTGRSE MSQSQNSPID TGRSEMSQSQ NSPIDTGRSE MSQSQNSPID TGRSEMSESQ SSPIGQSQSS PIGTGQSDMS 1401: QTPQVSDSSA PEPTSHTRTS DPQASSQTLR DDDEKIDDTA TSENEVTEIE KSKESSEEEE EEEEEEE |
||||||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)