AT5G01290.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : mRNA capping enzyme family protein | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
mRNA capping enzyme family protein; FUNCTIONS IN: phosphatase activity, protein tyrosine phosphatase activity, protein tyrosine/serine/threonine phosphatase activity, mRNA guanylyltransferase activity, polynucleotide 5'-phosphatase activity; INVOLVED IN: protein amino acid dephosphorylation, mRNA processing, mRNA capping, dephosphorylation; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold (InterPro:IPR012340), Dual-specific/protein-tyrosine phosphatase, conserved region (InterPro:IPR000387), mRNA capping enzyme (InterPro:IPR001339), mRNA capping enzyme, bifunctional (InterPro:IPR017074), Protein-tyrosine phosphatase, active site (InterPro:IPR016130), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Dual specificity phosphatase, catalytic domain (InterPro:IPR000340), mRNA capping enzyme, C-terminal (InterPro:IPR013846); BEST Arabidopsis thaliana protein match is: mRNA capping enzyme family protein (TAIR:AT3G09100.2); Has 888 Blast hits to 860 proteins in 246 species: Archae - 0; Bacteria - 2; Metazoa - 276; Fungi - 241; Plants - 79; Viruses - 71; Other Eukaryotes - 219 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:117520..121392 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 77073.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.91 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.73 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 657 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MDLNASPQPE EDDEPFKRRH EDRMESAVEI ARREREERKK RMRFDRPTRV SQPAFRDQYR DTRVYDQSKL PQGWLDCPGF GLEIGCIIPS KVPLSESYNE 101: HVPPGKRYSF KQVVRNQRIN GRKLGLVIDL TNTTRYYPTL DLKKDGIKHV KIACRGRDAV PDNVSVNTFV NEVLQFVLNQ KHAKKYVLVH CTHGHNRTGF 201: MIVHYLMRSM PTMNVTQALK LFSDARPPGI YKPDYIDALY TFYHEIKPES VTCPPTPEWK RSAELDLNGE AVQDDDDDDS PPDPVQEINQ ENVKMSNDDT 301: LGDEIPHYQE EAYRQFCYKM LMMNVGGRGF MQFPGSHPVS LDRESLQLLR QRYYYATWKA DGTRYMMLLT IDGCYLIDRS FKFRRVQMRF PCKHSREGIS 401: DKVHHYTLLD GEMVIDTPTG EQGEARRRYL VYDMVAINGE SVVERTFCER WNMFVREVIG PRAAEKLRSH CYRYDLEPFA VRMKGFWLLS TVEKLLKNTI 501: PSLSHEADGL IFQGWDDPYV PRTHKGLLKW KYAEMNSVDF LYEMGEEEGR GFLFLHERGK KKLMEGYSVE FRDDSDPSSY NGKIVECAWD KDKKVWFSMR 601: IRVDKTTPND INTARKVIKS INDNITEEVL LQEIREIIRL PMYADRIRND SQAARRR |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)