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AT5G01110.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Tetratricopeptide repeat (TPR)-like superfamily protein; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR-like) superfamily protein (TAIR:AT1G05670.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410Z7Z7eggNOG:KOG4197EMBL:AK228473EMBL:AL137189EMBL:BT005783EMBL:CP002688EnsemblPlants:AT5G01110
EnsemblPlants:AT5G01110.1entrez:831824Gene3D:1.25.40.10GeneID:831824Genevisible:Q9LFC5Gramene:AT5G01110.1hmmpanther:PTHR24015
hmmpanther:PTHR24015:SF770HOGENOM:HOG000115640InParanoid:Q9LFC5InterPro:IPR002885InterPro:IPR011990KEGG:ath:AT5G01110OMA:HAMAYLR
PaxDb:Q9LFC5Pfam:PF01535Pfam:PF12854Pfam:PF13041Pfam:Q9LFC5Pfscan:PS51375PhylomeDB:Q9LFC5
PIR:T45951PRIDE:Q9LFC5PRO:PR:Q9LFC5PROSITE:PS51375ProteinModelPortal:Q9LFC5Proteomes:UP000006548RefSeq:NP_195731.1
SMR:Q9LFC5STRING:3702.AT5G01110.1SUPFAM:SSF48452SUPFAM:SSF81901TAIR:AT5G01110TIGRfam:TIGR00756TIGRFAMs:TIGR00756
UniGene:At.33961UniProt:Q9LFC5
Coordinates (TAIR10) chr5:-:42114..44303
Molecular Weight (calculated) 81885.40 Da
IEP (calculated) 8.13
GRAVY (calculated) -0.09
Length 729 amino acids
Sequence (TAIR10)
(BLAST)
001: MIVHRIIPSR VKDPLTRFKP LKNLTTSSSP VFEPSSSSSS SSSSASFSVS DSFLVEKICF SLKQGNNNVR NHLIRLNPLA VVEVLYRCRN DLTLGQRFVD
101: QLGFHFPNFK HTSLSLSAMI HILVRSGRLS DAQSCLLRMI RRSGVSRLEI VNSLDSTFSN CGSNDSVFDL LIRTYVQARK LREAHEAFTL LRSKGFTVSI
201: DACNALIGSL VRIGWVELAW GVYQEISRSG VGINVYTLNI MVNALCKDGK MEKVGTFLSQ VQEKGVYPDI VTYNTLISAY SSKGLMEEAF ELMNAMPGKG
301: FSPGVYTYNT VINGLCKHGK YERAKEVFAE MLRSGLSPDS TTYRSLLMEA CKKGDVVETE KVFSDMRSRD VVPDLVCFSS MMSLFTRSGN LDKALMYFNS
401: VKEAGLIPDN VIYTILIQGY CRKGMISVAM NLRNEMLQQG CAMDVVTYNT ILHGLCKRKM LGEADKLFNE MTERALFPDS YTLTILIDGH CKLGNLQNAM
501: ELFQKMKEKR IRLDVVTYNT LLDGFGKVGD IDTAKEIWAD MVSKEILPTP ISYSILVNAL CSKGHLAEAF RVWDEMISKN IKPTVMICNS MIKGYCRSGN
601: ASDGESFLEK MISEGFVPDC ISYNTLIYGF VREENMSKAF GLVKKMEEEQ GGLVPDVFTY NSILHGFCRQ NQMKEAEVVL RKMIERGVNP DRSTYTCMIN
701: GFVSQDNLTE AFRIHDEMLQ RGFSPDDKF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)