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AT5G01090.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
extracellular 0.974
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Concanavalin A-like lectin family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Concanavalin A-like lectin family protein; FUNCTIONS IN: carbohydrate binding, binding; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Legume lectin, beta chain (InterPro:IPR001220), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Concanavalin A-like lectin/glucanase (InterPro:IPR008985); BEST Arabidopsis thaliana protein match is: Concanavalin A-like lectin family protein (TAIR:AT3G09190.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IJYKeggNOG:ENOG41122PYEMBL:AK228471EMBL:AL137189EMBL:CP002688EnsemblPlants:AT5G01090EnsemblPlants:AT5G01090.1
entrez:831840Gene3D:2.60.120.200GeneID:831840GO:GO:0016021GO:GO:0030246Gramene:AT5G01090.1hmmpanther:PTHR32401
hmmpanther:PTHR32401:SF7InterPro:IPR001220InterPro:IPR013320KEGG:ath:AT5G01090OMA:CGTLGAMPfam:PF00139PhylomeDB:Q9LFC7
PIR:T45949Proteomes:UP000006548RefSeq:NP_195729.1SMR:Q9LFC7SUPFAM:SSF49899TAIR:AT5G01090TMHMM:TMhelix
UniGene:At.27998UniProt:Q9LFC7
Coordinates (TAIR10) chr5:+:33055..34116
Molecular Weight (calculated) 38855.10 Da
IEP (calculated) 10.11
GRAVY (calculated) -0.00
Length 353 amino acids
Sequence (TAIR10)
(BLAST)
001: MAVFKTLAFL FVLSIVIYQS VAVTDVNSSF SFNGFVKAPS FDNNVALFGD SKLVHGGPSI QLTDSVSRSE GRVIYKKPIR LFQGKERNFS GSFSTSFSFS
101: MSDEIGSVLA FIMVPRGLDL RLFGRKGNNS SSGLGFLLKH KVVAVEFGIS KRGNHVGILV GRPESGKVRK LSSFGHHFNE EKRLNCWIDY EASSKRIEVR
201: LSLSAALKPV DPFVSYSVDL AKLWKDGKFM VGLTSANGNT SKPVYLHSWS FKLRHPSMRI HSQPLDPNDV SKTVKEGEKT VEVKGKGKCI WRILGALVLG
301: AVCGTLGAMF ALYLWTICGN RQSMAIVPEE CADEKADILV TKADVVVEEE VKK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)