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AT5G01010.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
golgi 0.999
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
CONTAINS InterPro DOMAIN/s: GOLD (InterPro:IPR009038); Has 172 Blast hits to 172 proteins in 43 species: Archae - 0; Bacteria - 0; Metazoa - 95; Fungi - 0; Plants - 63; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).
Protein Annotations
EMBL:AK118368EMBL:AK118711EMBL:AK175380EMBL:AK175538
EMBL:AK175582EMBL:AK175763EMBL:AK175776EMBL:AK175802
EMBL:AK175953EMBL:AK176004EMBL:AK176009EMBL:AK176023
EMBL:AK176045EMBL:AK176242EMBL:AK176250EMBL:AK176260
EMBL:AK176336EMBL:AK176507EMBL:AK176647EMBL:CP002688
EnsemblPlants:AT5G01010EnsemblPlants:AT5G01010.1entrez:831893ExpressionAtlas:Q8GSG8
GeneID:831893GO:GO:0006810GO:GO:0016021Gramene:AT5G01010.1
hmmpanther:PTHR23324hmmpanther:PTHR23324:SF45InterPro:IPR009038Pfscan:PS50866
PhylomeDB:Q8GSG8PROSITE:PS50866Proteomes:UP000006548RefSeq:NP_195721.5
SMR:Q8GSG8SUPFAM:0041713SUPFAM:SSF101576TAIR:AT5G01010
UniGene:At.22145UniProt:Q8GSG8
Coordinates (TAIR10) chr5:-:1388..4924
Molecular Weight (calculated) 50436.00 Da
IEP (calculated) 4.63
GRAVY (calculated) -0.36
Length 438 amino acids
Sequence (TAIR10)
(BLAST)
001: MASTEGLMPI TRAFLASYYD KYPFSPLSDD VSRLSSDMAS LIKLLTVQSP PSQGETSLID EANRQPPHKI DENMWKNREQ MEEILFLLSP SRWPVQLREP
101: STSEDAEFAS ILRTLKDSFD NAFTAMISFQ TKNSERIFST VMTYMPQDFR GTLIRQQKER SERNKQAEVD ALVSSGGSIR DTYALLWKQQ MERRRQLAQL
201: GSATGVYKTL VKYLVGVPQV LLDFIRQIND DDGPMEEQRE RYGPPLYSLT KMVIAIRVFL TLLWERYDTF KLSKDQMNLL SEAAIVYTSE FERFVTFISD
301: VFANSPFFIS ADTAGILWSR DNEEYKEIIV QAGRTYEISL MVESENSYIA WDFSLMQGKI SMDIGFSVEY INASGEKTLI LPYRRYEADQ GNFSTLMAGN
401: YKLVWDNSYS TFFKKTLRYK VDCIAPVVEP DPEPEPLN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)