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AT4G40090.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
extracellular 1.000
ASURE: extracellular
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : arabinogalactan protein 3
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
arabinogalactan protein 3 (AGP3); INVOLVED IN: multicellular organismal development; LOCATED IN: endomembrane system; EXPRESSED IN: shoot apex, hypocotyl, root, egg cell; BEST Arabidopsis thaliana protein match is: arabinogalactan protein 2 (TAIR:AT2G22470.1); Has 53677 Blast hits to 24644 proteins in 1622 species: Archae - 295; Bacteria - 15288; Metazoa - 12859; Fungi - 4384; Plants - 9001; Viruses - 2001; Other Eukaryotes - 9849 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JVVFeggNOG:ENOG41105IUEMBL:AF082300EMBL:AL161596EMBL:CP002687EnsemblPlants:AT4G40090EnsemblPlants:AT4G40090.1
entrez:830172GeneID:830172Genevisible:Q9ZT17GO:GO:0005886GO:GO:0007275GO:GO:0031225Gramene:AT4G40090.1
hmmpanther:PTHR36321hmmpanther:PTHR36321:SF1HOGENOM:HOG000033857InParanoid:Q9ZT17KEGG:ath:AT4G40090OMA:ATSCMAQPaxDb:Q9ZT17
Pfam:Q9ZT17Pfscan:PS51257PRO:PR:Q9ZT17ProteinModelPortal:Q9ZT17Proteomes:UP000006548RefSeq:NP_568081.5STRING:3702.AT4G40090.1
TAIR:AT4G40090tair10-symbols:AGP3UniGene:At.22671UniProt:Q9ZT17
Coordinates (TAIR10) chr4:-:18581085..18581504
Molecular Weight (calculated) 13621.50 Da
IEP (calculated) 4.67
GRAVY (calculated) 0.33
Length 139 amino acids
Sequence (TAIR10)
(BLAST)
001: MALKTLQALI FLGLFAASCL AQAPAPAPIT FLPPVESPSP VVTPTAEPPA PVASPPIPAN EPTPVPTTPP TVSPPTTSPT TSPVASPPKP YALAPGPSGP
101: TPAPAPAPRA DGPVADSALT NKAFLVSTVI AGALYAVLA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)