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AT4G40060.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : homeobox protein 16
Curator
Summary (TAIR10)
Encodes a homeodomain leucine zipper class I (HD-Zip I) protein.
Computational
Description (TAIR10)
homeobox protein 16 (HB16); FUNCTIONS IN: sequence-specific DNA binding, transcription activator activity, sequence-specific DNA binding transcription factor activity; INVOLVED IN: in 6 processes; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Homeobox, conserved site (InterPro:IPR017970), Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), Helix-turn-helix motif, lambda-like repressor (InterPro:IPR000047), Leucine zipper, homeobox-associated (InterPro:IPR003106), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: homeobox protein 6 (TAIR:AT2G22430.1); Has 9713 Blast hits to 9689 proteins in 534 species: Archae - 2; Bacteria - 4; Metazoa - 7673; Fungi - 210; Plants - 1646; Viruses - 5; Other Eukaryotes - 173 (source: NCBI BLink).
Protein Annotations
BioGrid:15449eggNOG:ENOG410Z2UEeggNOG:KOG0483EMBL:AF076641
EMBL:AF370620EMBL:AL035708EMBL:AL161596EMBL:AY054571
EMBL:AY128917EMBL:CP002687EnsemblPlants:AT4G40060EnsemblPlants:AT4G40060.1
entrez:830169Gene3D:1.10.10.60GeneID:830169Genevisible:Q940J1
GO:GO:0003700GO:GO:0005634GO:GO:0006351GO:GO:0009637
GO:GO:0030308GO:GO:0043565GO:GO:0045893GO:GO:0048510
GO:GO:0048573Gramene:AT4G40060.1hmmpanther:PTHR24326hmmpanther:PTHR24326:SF196
HOGENOM:HOG000006025InParanoid:Q940J1InterPro:IPR000047InterPro:IPR001356
InterPro:IPR003106InterPro:IPR009057InterPro:IPR017970KEGG:ath:AT4G40060
KO:K09338ncoils:CoilOMA:KANCFTYPaxDb:Q940J1
Pfam:PF00046Pfam:PF02183Pfam:Q940J1Pfscan:PS50071
PhylomeDB:Q940J1PIR:G85474PIR:T06112PRIDE:Q940J1
PRINTS:PR00031PRO:PR:Q940J1PROSITE:PS00027PROSITE:PS50071
ProteinModelPortal:Q940J1Proteomes:UP000006548RefSeq:NP_195716.1scanprosite:PS00027
SMART:SM00389SMR:Q940J1STRING:3702.AT4G40060.1SUPFAM:SSF46689
TAIR:AT4G40060tair10-symbols:ATHB-16tair10-symbols:ATHB16tair10-symbols:HB16
UniGene:At.20863UniProt:Q940J1
Coordinates (TAIR10) chr4:-:18571682..18572774
Molecular Weight (calculated) 33396.30 Da
IEP (calculated) 4.88
GRAVY (calculated) -0.96
Length 294 amino acids
Sequence (TAIR10)
(BLAST)
001: MKRLSSSDSM CGLISTSTDE QSPRGYGSNY QSMLEGYDED ATLIEEYSGN HHHMGLSEKK RRLKVDQVKA LEKNFELENK LEPERKTKLA QELGLQPRQV
101: AVWFQNRRAR WKTKQLEKDY GVLKGQYDSL RHNFDSLRRD NDSLLQEISK IKAKVNGEED NNNNKAITEG VKEEEVHKTD SIPSSPLQFL EHSSGFNYRR
201: SFTDLRDLLP NSTVVEAGSS DSCDSSAVLN DETSSDNGRL TPPVTVTGGS FLQFVKTEQT EDHEDFLSGE EACGFFSDEQ PPSLHWYSAS DHWT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)