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AT4G40040.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Histone superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Histone superfamily protein; FUNCTIONS IN: DNA binding; INVOLVED IN: nucleosome assembly; LOCATED IN: nucleosome; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 17 growth stages; CONTAINS InterPro DOMAIN/s: Histone H3 (InterPro:IPR000164), Histone-fold (InterPro:IPR009072), Histone core (InterPro:IPR007125); BEST Arabidopsis thaliana protein match is: Histone superfamily protein (TAIR:AT4G40030.2); Has 14600 Blast hits to 14592 proteins in 7243 species: Archae - 0; Bacteria - 0; Metazoa - 10603; Fungi - 2037; Plants - 1258; Viruses - 0; Other Eukaryotes - 702 (source: NCBI BLink).
Protein Annotations
BioGrid:15444BioGrid:15445BioGrid:16243eggNOG:COG2036eggNOG:KOG1745EMBL:AF385735EMBL:AL035708
EMBL:AL161596EMBL:AL365234EMBL:AL391222EMBL:AY070749EMBL:AY078027EMBL:AY086668EMBL:AY097375
EMBL:BT002391EMBL:BT003326EMBL:BT025499EMBL:CP002687EMBL:CP002688EMBL:X60429EnsemblPlants:AT4G40030.1
EnsemblPlants:AT4G40030.3EnsemblPlants:AT4G40040EnsemblPlants:AT4G40040.1EnsemblPlants:AT4G40040.2EnsemblPlants:AT5G10980.1entrez:830164entrez:830165
entrez:830965ExpressionAtlas:P59169Gene3D:1.10.20.10GeneID:830164GeneID:830165GeneID:830965Genevisible:P59169
GO:GO:0000786GO:GO:0003677GO:GO:0005634hmmpanther:PTHR11426HOGENOM:HOG000155290InParanoid:P59169InterPro:IPR000164
InterPro:IPR007125InterPro:IPR009072iPTMnet:P59169KEGG:ath:AT4G40040KEGG:ath:AT5G10980KO:K11253PANTHER:PTHR11426
PaxDb:P59169PDB:4PL6PDB:4PLIPDB:4PLLPDBsum:4PL6PDBsum:4PLIPDBsum:4PLL
Pfam:P59169Pfam:PF00125PhylomeDB:P59169PIR:S24346PRIDE:P59169PRINTS:PR00622PRO:PR:P59169
PROSITE:PS00322PROSITE:PS00959ProteinModelPortal:P59169Proteomes:UP000006548RefSeq:NP_001031816.1RefSeq:NP_001078517.1RefSeq:NP_195713.1
RefSeq:NP_196659.1RefSeq:NP_849529.1scanprosite:PS00322scanprosite:PS00959SMART:SM00428SMR:P59169STRING:3702.AT5G10980.1
SUPFAM:SSF47113TAIR:AT4G40030TAIR:AT4G40040TAIR:AT5G10980UniGene:At.10968UniGene:At.24091UniGene:At.25092
UniGene:At.6019UniGene:At.67362UniProt:B9DGR9UniProt:P59169
Coordinates (TAIR10) chr4:-:18557539..18558236
Molecular Weight (calculated) 15407.00 Da
IEP (calculated) 11.74
GRAVY (calculated) -0.60
Length 136 amino acids
Sequence (TAIR10)
(BLAST)
001: MARTKQTARK STGGKAPRKQ LATKAARKSA PTTGGVKKPH RYRPGTVALR EIRKYQKSTE LLIRKLPFQR LVREIAQDFK TDLRFQSHAV LALQEAAEAY
101: LVGLFEDTNL CAIHAKRVTI MPKDIQLARR IRGERA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)