AT4G40000.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; FUNCTIONS IN: methyltransferase activity, RNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p (InterPro:IPR001678), Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p, conserved site (InterPro:IPR018314); BEST Arabidopsis thaliana protein match is: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (TAIR:AT2G22400.1); Has 8835 Blast hits to 8804 proteins in 2376 species: Archae - 282; Bacteria - 6104; Metazoa - 590; Fungi - 311; Plants - 234; Viruses - 0; Other Eukaryotes - 1314 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:-:18543989..18547443 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 88188.20 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.90 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.46 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 783 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGRGRRHRGS TSKRNQIENS NDDNVRKPLK SEASFDSNNL QKPICSNLHF EEYYKEQRIV KAQEWDSFME FLRKPLPAAF RVYSNGQFCD EIRLKLENDF 101: MISLQAEAIE SGELEAIKPL PWYPKNLAWH SNFSRKEIRK NQTLERFHEF LKLETEAGNM TRQESVSMVP PLFLDVHPDH FVLDMCAAPG SKTFQLLEII 201: HESSEPGSLP NGMVVANDVD YKRSNLLIHQ TKRTCTTNLM VTNNEGQHFP SCNTKRTLSV ASETNPHPID QLLFDRVLCD VPCSGDGTLR KAPDIWRRWN 301: SGSGNGLHSL QVVLAMRGLS LLKVGGRMVY STCSMNPIED EAVVAEILRR CGCSVELVDV SDKLPELIRR PGLTKWKVHD RGGWYRSYKD VPKSQRDGVL 401: RSMFPSGKSD KDSSGGKNSY EEMASISSDE SAEEVCDLPL ELCMRILPHD QNTGGFFIAV LHKVSPLPDF QEKVTQKRNL STRNNINSSE KSSSYEAVSD 501: TVVTKPEEGT EEIVLEATVS ENGFEPPEME STWNEGIVEL AQKLDDIEGK REVPSMQGKW KGLYPVVFLR DQTGINGIKT FYGIKDESFP LYGHLVTRNS 601: DISSHGNVKR IYYVSKAVKN VLELNFAVGK PLKISSVGLK MFEKQSAKEC EANCCSFRIT SEGLPVILPY MTKQILYATM ADFKNLLQHK SIKFLDFIHP 701: QIGEKAAELA LGSCVMVLVD DSQLGSEQFK VNSSTIAIGC WKGKASLTVM VTTVDCHQLI QRLSDRSKEK EKAENCFKTA ETA |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)