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AT4G39980.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31932409 (2020): plastid
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:31520498 (2020): mitochondrion
  • PMID:31023727 (2019): mitochondrion
  • PMID:30962257 (2019): plastid
  • PMID:30394608 (2019): plastid
  • PMID:30135097 (2018): plastid
  • PMID:29967049 (2018): plastid
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:27943495 (2017): mitochondrion
  • PMID:27137770 (2016): plastid plastid stroma
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi
  • PMID:24872594 (2014): plastid
  • PMID:24124904 (2013): plastid
  • PMID:23851315 (2013): plastid
  • PMID:23750852 (2013): mitochondrion
  • PMID:22923678 (2012): mitochondrion
  • PMID:22550958 (2012): plastid
  • PMID:21533090 (2011): extracellular region plant-type cell wall
  • PMID:21311031 (2011): mitochondrion
  • PMID:19334764 (2009): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase 1
Curator
Summary (TAIR10)
Encodes a 2-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase, which catalyzes the first committed step in aromatic amino acid biosynthesis. Gene expression is induced by wounding and pathogenic bacteria Pseudomonas syringae.
Computational
Description (TAIR10)
3-deoxy-D-arabino-heptulosonate 7-phosphate synthase 1 (DHS1); CONTAINS InterPro DOMAIN/s: DAHP synthetase, class II (InterPro:IPR002480); BEST Arabidopsis thaliana protein match is: Class-II DAHP synthetase family protein (TAIR:AT1G22410.1); Has 3797 Blast hits to 3784 proteins in 681 species: Archae - 0; Bacteria - 1224; Metazoa - 0; Fungi - 110; Plants - 172; Viruses - 0; Other Eukaryotes - 2291 (source: NCBI BLink).
Protein Annotations
BioCyc:RETL1328306-WGS:GSTH-2388-MONOMERBioGrid:15439BRENDA:2.5.1.54EC:2.5.1.54
eggNOG:COG3200eggNOG:ENOG410IGEIEMBL:AL035708EMBL:AL161596
EMBL:AY090349EMBL:AY140052EMBL:BT000821EMBL:CP002687
EMBL:M74819EnsemblPlants:AT4G39980EnsemblPlants:AT4G39980.1entrez:830159
GeneID:830159Genevisible:P29976GO:GO:0003849GO:GO:0005739
GO:GO:0009073GO:GO:0009423GO:GO:0009507GO:GO:0009611
Gramene:AT4G39980.1gramene_pathway:2.5.1.54gramene_pathway:ARO-PWY-ARAgramene_plant_reactome:1119430
gramene_plant_reactome:6875266HOGENOM:HOG000242917InParanoid:P29976IntAct:P29976
InterPro:IPR002480KEGG:00400+2.5.1.54KEGG:ath:AT4G39980KO:K01626
OMA:DHPLMTTPaxDb:P29976Pfam:P29976Pfam:PF01474
PhylomeDB:P29976PIR:A41370PIR:T06104PRIDE:P29976
PRO:PR:P29976ProteinModelPortal:P29976Proteomes:UP000006548RefSeq:NP_195708.1
SMR:P29976STRING:3702.AT4G39980.1SUPFAM:SSF51569TAIR:AT4G39980
tair10-symbols:DHS1TIGRfam:TIGR01358TIGRFAMs:TIGR01358UniGene:At.23161
UniPathway:UPA00053UniProt:P29976
Coordinates (TAIR10) chr4:+:18539654..18541832
Molecular Weight (calculated) 57982.10 Da
IEP (calculated) 8.16
GRAVY (calculated) -0.31
Length 525 amino acids
Sequence (TAIR10)
(BLAST)
001: MALSNASSLS TRSIYGGDLS HRPSNRQSSF TFHPAVNTKP KSVNLVTAVH AAEPARNAVS VKESVASSSS GALKWTPESW KLKKALQLPD YPNANELESV
101: LKTIEAFPPI VFAGEARNLE ERLADAAVGK AFLLQGGDCA ESFKEFNATN IRDTFRVLLQ MSIVLTFGGQ VPVIKVGRMA GQFAKPRSDA FEEKDGVKLP
201: SYKGDNINGD TFDEKSRIPD PNRMIRAYTQ SAATLNLLRA FATGGYAAIQ RVTQWNLDFV EQSEQADRYQ ELANRVDEAL GFMSACGLGT DHPLMTTTDF
301: YTSHECLLLP YEQSLTRLDS TSGLYYDCSA HMVWCGERTR QLDGAHVEFL RGIANPLGIK VSNKMDPFEL VKLVEILNPN NKPGRITVIV RMGAENMRVK
401: LPHLIRAVRR SGQIVTWVCD PMHGNTIKAP CGLKTRAFDS ILAEVRAFLD VHEQEGSHAG GIHLEMTGQN VTECIGGSRT VTYDDLSSRY HTHCDPRLNA
501: SQSLELAFIV AERLRKRRTG SQRVS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)