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AT4G39960.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:27177187 (2016): nucleus
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:24872594 (2014): plastid plastid stroma
  • PMID:24872594 (2014): plastid plastid envelope
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:20423899 (2010): plastid
  • PMID:20061580 (2010): plastid plastid envelope
  • PMID:18431481 (2008): plastid plastid thylakoid
  • PMID:15322131 (2004): plastid
  • PMID:15028209 (2004): plastid
FP Images

Arabidopsis cell culture (plastidal marker)

At4g39960-GFP
(full-length)
plastidal marker-RFPoverlay

Images by Sandra Tanz
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Molecular chaperone Hsp40/DnaJ family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Molecular chaperone Hsp40/DnaJ family protein; FUNCTIONS IN: unfolded protein binding, heat shock protein binding, ATP binding; INVOLVED IN: protein folding, response to heat; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), HSP40/DnaJ peptide-binding (InterPro:IPR008971), Chaperone DnaJ, C-terminal (InterPro:IPR002939), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Heat shock protein DnaJ, conserved site (InterPro:IPR018253), Heat shock protein DnaJ, cysteine-rich domain (InterPro:IPR001305), Chaperone DnaJ (InterPro:IPR012724), Heat shock protein DnaJ (InterPro:IPR003095); BEST Arabidopsis thaliana protein match is: DNAJ heat shock family protein (TAIR:AT2G22360.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0484eggNOG:KOG0715EMBL:AY052658EMBL:AY063727EMBL:CP002687EnsemblPlants:AT4G39960EnsemblPlants:AT4G39960.1
entrez:830157Gene3D:1.10.287.110Gene3D:2.10.230.10GeneID:830157GO:GO:0005524GO:GO:0006457GO:GO:0009408
GO:GO:0009507GO:GO:0009535GO:GO:0009941GO:GO:0046872Gramene:AT4G39960.1HAMAP:MF_01152hmmpanther:PTHR24078
hmmpanther:PTHR24078:SF315HOGENOM:HOG000226717InterPro:IPR001305InterPro:IPR001623InterPro:IPR002939InterPro:IPR008971InterPro:IPR012724
InterPro:IPR018253KEGG:ath:AT4G39960KO:K03686OMA:CNECSGQPfam:PF00226Pfam:PF00684Pfam:PF01556
Pfscan:PS50076Pfscan:PS51188PhylomeDB:Q940V1PRINTS:PR00625PROSITE:PS00636PROSITE:PS50076PROSITE:PS51188
Proteomes:UP000006548RefSeq:NP_568076.1scanprosite:PS00636SMART:SM00271SMR:Q940V1STRING:3702.AT4G39960.1SUPFAM:SSF46565
SUPFAM:SSF49493SUPFAM:SSF57938TAIR:AT4G39960TIGRfam:TIGR02349TIGRFAMs:TIGR02349UniGene:At.43709UniGene:At.68472
UniProt:Q940V1
Coordinates (TAIR10) chr4:+:18534194..18536320
Molecular Weight (calculated) 48034.60 Da
IEP (calculated) 9.42
GRAVY (calculated) -0.36
Length 447 amino acids
Sequence (TAIR10)
(BLAST)
001: MALIQFGSSC VAQWGILRPR FAVKAFYPSR LESHQDNCIS QINCLGASRS SMFAQGSLPF LSLTGVSPNT HSRRGARFTV RADTDFYSVL GVSKNATKAE
101: IKSAYRKLAR SYHPDVNKDA GAEDKFKEIS NAYEILSDDE KRSLYDRYGE AGVKGAGMGG MGDYSNPFDL FESLFEGMGG MGGMGGGMGS RGSRSRAIDG
201: EDEYYSLILN FKEAVFGIEK EIEISRLESC GTCNGSGAKA GTKPTKCKTC GGQGQVVAST RTPLGVFQQV MTCSPCNGTG EISKPCGACS GDGRVRRTKR
301: ISLKVPAGVD SGSRLRVRGE GNAGKRGGSP GDLFAVIEVI PDPVLKRDDT NILYTCKISY VDAILGTTLK VPTVDGEVDL KVPAGTQPST TLVMAKKGVP
401: VLNKSKMRGD QLVRVQVEIP KRLSKEEKML VEELADMSKN KVANSRR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)