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AT4G39910.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.701
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : ubiquitin-specific protease 3
Curator
Summary (TAIR10)
Encodes a nuclear ubiquitin-specific protease.
Computational
Description (TAIR10)
ubiquitin-specific protease 3 (UBP3); CONTAINS InterPro DOMAIN/s: Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2, conserved site (InterPro:IPR018200), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 (InterPro:IPR001394); BEST Arabidopsis thaliana protein match is: ubiquitin-specific protease 4 (TAIR:AT2G22310.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT4G39910-MONOMEREC:3.4.19.12eggNOG:ENOG410XQ81eggNOG:KOG1864EMBL:AL035708EMBL:AL161596EMBL:AY058889
EMBL:AY079044EMBL:CP002687EMBL:U76845EnsemblPlants:AT4G39910EnsemblPlants:AT4G39910.1entrez:830150GeneID:830150
Genevisible:O24454GO:GO:0005634GO:GO:0006511GO:GO:0016579GO:GO:0036459Gramene:AT4G39910.1hmmpanther:PTHR24006
hmmpanther:PTHR24006:SF469HOGENOM:HOG000231498InParanoid:O24454InterPro:IPR001394InterPro:IPR018200InterPro:IPR028889KEGG:ath:AT4G39910
KO:K11842MEROPS:C19.008OMA:LEYYTSNPaxDb:O24454Pfam:O24454Pfam:PF00443Pfscan:PS50235
PhylomeDB:O24454PIR:T06097PRIDE:O24454PRO:PR:O24454PROSITE:PS00972PROSITE:PS00973PROSITE:PS50235
ProteinModelPortal:O24454Proteomes:UP000006548RefSeq:NP_568074.1scanprosite:PS00972scanprosite:PS00973SMR:O24454STRING:3702.AT4G39910.1
SUPFAM:SSF54001TAIR:AT4G39910tair10-symbols:ATUBP3tair10-symbols:UBP3UniGene:At.24733UniProt:O24454
Coordinates (TAIR10) chr4:-:18511858..18514139
Molecular Weight (calculated) 42449.30 Da
IEP (calculated) 6.51
GRAVY (calculated) -0.39
Length 371 amino acids
Sequence (TAIR10)
(BLAST)
001: MGAAGSKLEK ALGDQFPEGE RYFGFENFGN TCYCNSVLQA LYFCVPFREQ LLEYYTSNKS VADAEENLMT CLADLFSQIS SQKKKTGVIA PKRFVQRLKK
101: QNELFRSYMH QDAHEFLNYL LNEVVDILEK EAKATKTEHE TSSSSSPEKI ANGLKVPQAN GVVHKEPIVT WVHNIFQGIL TNETRCLRCE TVTARDETFL
201: DLSLDIEQNS SITSCLKNFS STETLHAEDK FFCDKCCSLQ EAQKRMKIKK PPHILVIHLK RFKYIEQLGR YKKLSYRVVF PLELKLSNTV EPYADVEYSL
301: FAVVVHVGSG PNHGHYVSLV KSHNHWLFFD DENVEMIEES AVQTFFGSSQ EYSSNTDHGY ILFYESLGPT K
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)