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AT4G39900.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.510
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IYS1eggNOG:ENOG411181NEMBL:AY050943EMBL:AY057651EMBL:AY079397EMBL:AY084970EMBL:CP002687
EnsemblPlants:AT4G39900EnsemblPlants:AT4G39900.1entrez:830149GeneID:830149GO:GO:0016021Gramene:AT4G39900.1hmmpanther:PTHR34064
hmmpanther:PTHR34064:SF5IntAct:Q93VM6KEGG:ath:AT4G39900OMA:NRWRRYKPhylomeDB:Q93VM6Proteomes:UP000006548RefSeq:NP_568073.1
TAIR:AT4G39900TMHMM:TMhelixUniGene:At.2864UniProt:Q93VM6
Coordinates (TAIR10) chr4:-:18508569..18510289
Molecular Weight (calculated) 27175.30 Da
IEP (calculated) 7.50
GRAVY (calculated) -0.30
Length 245 amino acids
Sequence (TAIR10)
(BLAST)
001: MSDFFDEGKQ QFASVADGNA PLKYPSFKLP KSTFGDTGKH SAIDVFPLLV KEAAFPLKED RDIDTSLVQD VCTISVLPDE GNTIPQCTSH FTLLSFVKAL
101: LPSKNQMLID AQLNCQKTQN RINVLLGGTD SYQSCVVDIN VEKGNGGETV TSHDEVVASM KSESVHMQKV LQRQASLSTD KALSERCHDA PTNRWRRYKR
201: AASFDSRKIV ILFSILSSVG TLILIYLTLR VKQNGDNNNN SFNHM
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)