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AT4G39880.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
mitochondrion 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Ribosomal protein L23/L15e family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Ribosomal protein L23/L15e family protein; FUNCTIONS IN: structural constituent of ribosome, nucleotide binding; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: ribosome, intracellular; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L23/L15e, core (InterPro:IPR012678), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), Ribosomal protein L25/L23 (InterPro:IPR013025); Has 3109 Blast hits to 3109 proteins in 1190 species: Archae - 0; Bacteria - 2436; Metazoa - 5; Fungi - 1; Plants - 57; Viruses - 0; Other Eukaryotes - 610 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG4111IABeggNOG:KOG4089EMBL:AL035708EMBL:AL161596EMBL:AY093190EMBL:BT006553EMBL:CP002687
EnsemblPlants:AT4G39880EnsemblPlants:AT4G39880.1entrez:830147Gene3D:3.30.70.330GeneID:830147GO:GO:0000166GO:GO:0003735
GO:GO:0005840GO:GO:0006412Gramene:AT4G39880.1hmmpanther:PTHR12059hmmpanther:PTHR12059:SF5InterPro:IPR012677InterPro:IPR012678
InterPro:IPR013025KEGG:ath:AT4G39880KO:K02892OMA:DDKKSHWPfam:PF00276PhylomeDB:Q9SMR5PIR:T06094
Proteomes:UP000006548RefSeq:NP_195698.1SMR:Q9SMR5STRING:3702.AT4G39880.1SUPFAM:SSF54189TAIR:AT4G39880UniGene:At.31054
UniProt:Q9SMR5
Coordinates (TAIR10) chr4:+:18504601..18505137
Molecular Weight (calculated) 19853.20 Da
IEP (calculated) 10.86
GRAVY (calculated) -0.63
Length 178 amino acids
Sequence (TAIR10)
(BLAST)
001: MGSRLGGRVV HFANLPIKLL MPAKLTNIHE FALKTIPSAS KIEIKRVLES LYGFDVEKVN TLNMDGKKKK RGGLLIAKAD YKKAYVTLRS PLSISRDLFP
101: VKYIEEDRKS KVKGSSFVEE EDDKKSHWLD RKEKREIGGY GKGKGRRGGE RANSPTRGGA AAAGTAKFPW SNMRFVGK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)