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AT4G39870.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.999
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : TLD-domain containing nucleolar protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
TLD-domain containing nucleolar protein; CONTAINS InterPro DOMAIN/s: TLDc (InterPro:IPR006571); BEST Arabidopsis thaliana protein match is: TLD-domain containing nucleolar protein (TAIR:AT2G05590.2); Has 2250 Blast hits to 2105 proteins in 277 species: Archae - 0; Bacteria - 56; Metazoa - 1073; Fungi - 317; Plants - 190; Viruses - 32; Other Eukaryotes - 582 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IMGJeggNOG:ENOG4111QBZEMBL:BT002324EMBL:CP002687EnsemblPlants:AT4G39870EnsemblPlants:AT4G39870.1EnsemblPlants:AT4G39870.2
entrez:830146GeneID:830146Gramene:AT4G39870.1Gramene:AT4G39870.2hmmpanther:PTHR23354hmmpanther:PTHR23354:SF76HOGENOM:HOG000241755
InterPro:IPR006571KEGG:ath:AT4G39870OMA:NNDSMEIPfam:PF07534PhylomeDB:Q8GUN9Proteomes:UP000006548RefSeq:NP_001190974.1
RefSeq:NP_195697.3SMART:SM00584SMR:Q8GUN9TAIR:AT4G39870UniGene:At.28500UniProt:Q8GUN9
Coordinates (TAIR10) chr4:+:18502234..18504275
Molecular Weight (calculated) 43876.90 Da
IEP (calculated) 4.65
GRAVY (calculated) -0.67
Length 394 amino acids
Sequence (TAIR10)
(BLAST)
001: MGKHKSFRSK AVHFVTDLTA GLLNPISDKP SSAHPPPPLP DEEDESKRNQ LESTTAEQPK DLVDEPDTSS FSAFLGSLLS SDPKDKRKDQ DPEDEEDEEE
101: DEEEDSEAET SDTSSSSANP TRTMKETTSG GAAKKSFLSK YKQHFRNFYQ AVKFPGVKER KGNSDVIPDD EETEYYDGLE MKPMQNNNVK EEVTVVVQAI
201: IPEISEPSLL LSEQSRRSLY TSLPALVQGR KWILLYSTWR HGISLSTLYR KSLLWPGLSL LVVGDRKGSV FGGLVEAPLI PTDKKYQGTN STFVFTNKSG
301: QPTIYRPTGA NRFYTLCSKE FLALGGGGRF ALYLDSELLS GSSAYSETYG NSCLADSQDF DVKEVELWGF VYGSKYDEIL AHSKTMEPGL CRWS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)