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AT4G39840.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 0.979
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 20719 Blast hits to 6096 proteins in 607 species: Archae - 22; Bacteria - 3243; Metazoa - 4364; Fungi - 2270; Plants - 237; Viruses - 128; Other Eukaryotes - 10455 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IVXTeggNOG:ENOG4111Z8XEMBL:AL035708EMBL:AL161596EMBL:AY072109EMBL:AY133834EMBL:CP002687
EnsemblPlants:AT4G39840EnsemblPlants:AT4G39840.1entrez:830143GeneID:830143GO:GO:0005768GO:GO:0005794GO:GO:0005802
GO:GO:0016021Gramene:AT4G39840.1hmmpanther:PTHR35310HOGENOM:HOG000242794KEGG:ath:AT4G39840OMA:SSSTYVCPhylomeDB:Q9SMR9
PIR:T06090Proteomes:UP000006548RefSeq:NP_195694.1TAIR:AT4G39840TMHMM:TMhelixUniGene:At.2859UniGene:At.71825
UniProt:Q9SMR9
Coordinates (TAIR10) chr4:+:18485268..18486623
Molecular Weight (calculated) 50612.30 Da
IEP (calculated) 10.29
GRAVY (calculated) -0.20
Length 451 amino acids
Sequence (TAIR10)
(BLAST)
001: MSPLKYLCFR KVLLLLLYSS LFLFSSSSFF ASSVDDHELQ RIDPHFRVRR LLVKDLDSTG DDDETNLPPP PKKKKLLTDS VSSSSSSSGT KKNQTKLLKP
101: ISSSSSTKNQ TKLAKTTTMG TSHKLNSTKS SSNTTKTSSE LKKLNSGTKS TNSTSSIKKS ADLSKSSSSK NKTTIKPPSS KLSSPPSEKK SQPSSKPVTK
201: SKQSEKEIKP FWLDDEEDED FVSEFRDLPT RFQRSLIPDL ERISTTSKNY INKANKQITK NFKPYFGNKY APTIASVVSF VFILVPLLLV SLIFNRFKAY
301: FSLQKILIFI QIYLSIYFSI LCLSSLVTGI EPLKFLYATS SSTYVCLQIL QTLGYVFYLL LLLMYLVLVF STDCGLGLKV LGLAQTFVGF AVGLHYYVAV
401: FHRVVLRQPP KTNWKIHGVY ATCFLLICLL SNAERRKKEY LEEGGDEGKK N
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)