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AT4G39820.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
golgi 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:21826108 (2012): Golgi trans-Golgi network multivesicular body
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026); Has 285 Blast hits to 281 proteins in 117 species: Archae - 4; Bacteria - 22; Metazoa - 124; Fungi - 26; Plants - 36; Viruses - 0; Other Eukaryotes - 73 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XSX3eggNOG:KOG2796EMBL:BT015781EMBL:CP002687EnsemblPlants:AT4G39820EnsemblPlants:AT4G39820.1entrez:830141
Gene3D:1.25.40.10GeneID:830141Gramene:AT4G39820.1hmmpanther:PTHR21581hmmpanther:PTHR21581:SF6IntAct:Q5XF35InterPro:IPR011990
InterPro:IPR013026KEGG:ath:AT4G39820OMA:NWIARVAPfam:PF13414Pfscan:PS50293PROSITE:PS50293Proteomes:UP000006548
RefSeq:NP_195692.2STRING:3702.AT4G39820.1SUPFAM:SSF48452TAIR:AT4G39820UniGene:At.2300UniProt:Q5XF35
Coordinates (TAIR10) chr4:-:18476698..18477924
Molecular Weight (calculated) 46320.00 Da
IEP (calculated) 4.90
GRAVY (calculated) -0.35
Length 408 amino acids
Sequence (TAIR10)
(BLAST)
001: MFTESSPAMD PDLPESETRP EFNPSSTDST AMAESTDAGE PTAFELASSQ VTSVADLPPE RFNSLDELTH DLGSLHELST RGSWQAILEK ISQARALFLL
101: TKPHEHLTYL TYQVMALAKL RRSDEASHEL NSLHDFDGTH YRYESFPEIY PNRRGSMVPF SLRWLYALIP TKLGNRQEGL DRLYVLLDFV RDRIREKESQ
201: SLESSVELWK KRETFVMNCL LGFHLGHKEF GVSLDLMKEL INRDPLDPVL ISKLGSVQMQ FGDVEGAKTT FDRVEKMLNE GKSNGLLNEI QFNNLVGRNK
301: ALVYVVAKDY VSAVREYDKC IERDNSDIIA VNNKALCLMY LRDLSDAIKV MESALERVPT AALNESLVVN LCSMYELAYV NHTDVKRTLN NWIARVAPDD
401: FDSSCTRV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)