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AT4G39780.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Integrase-type DNA-binding superfamily protein
Curator
Summary (TAIR10)
encodes a member of the DREB subfamily A-6 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 8 members in this subfamily including RAP2.4.
Computational
Description (TAIR10)
Integrase-type DNA-binding superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: Integrase-type DNA-binding superfamily protein (TAIR:AT2G22200.1); Has 5858 Blast hits to 5712 proteins in 253 species: Archae - 0; Bacteria - 10; Metazoa - 0; Fungi - 0; Plants - 5812; Viruses - 11; Other Eukaryotes - 25 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IEJEeggNOG:ENOG410YGN6EMBL:AL022605EMBL:AL161595
EMBL:AY560850EMBL:BT025719EMBL:CP002687EnsemblPlants:AT4G39780
EnsemblPlants:AT4G39780.1entrez:830136Gene3D:3.30.730.10GeneID:830136
Genevisible:O65665GO:GO:0003677GO:GO:0003700GO:GO:0005634
GO:GO:0006351GO:GO:0009873Gramene:AT4G39780.1hmmpanther:PTHR31657
hmmpanther:PTHR31657:SF9HOGENOM:HOG000239817InParanoid:O65665IntAct:O65665
InterPro:IPR001471InterPro:IPR016177KEGG:ath:AT4G39780MINT:MINT-7263056
OMA:TEYQESEPaxDb:O65665Pfam:O65665Pfam:PF00847
Pfscan:PS51032PhylomeDB:O65665PIR:T05015PRIDE:O65665
PRINTS:PR00367PRO:PR:O65665PROSITE:PS51032ProteinModelPortal:O65665
Proteomes:UP000006548RefSeq:NP_195688.1SMART:SM00380SMR:O65665
STRING:3702.AT4G39780.1SUPFAM:SSF54171TAIR:AT4G39780UniGene:At.2297
UniProt:O65665
Coordinates (TAIR10) chr4:-:18458216..18459034
Molecular Weight (calculated) 30952.90 Da
IEP (calculated) 4.60
GRAVY (calculated) -0.66
Length 272 amino acids
Sequence (TAIR10)
(BLAST)
001: MAAIDMFNSN TDPFQEELMK ALQPYTTNTD SSSPTYSNTV FGFNQTTSLG LNQLTPYQIH QIQNQLNQRR NIISPNLAPK PVPMKNMTAQ KLYRGVRQRH
101: WGKWVAEIRL PKNRTRLWLG TFDTAEEAAM AYDLAAYKLR GEFARLNFPQ FRHEDGYYGG GSCFNPLHSS VDAKLQEICQ SLRKTEDIDL PCSETELFPP
201: KTEYQESEYG FLRSDENSFS DESHVESSSP ESGITTFLDF SDSGFDEIGS FGLEKFPSVE IDWDAISKLS ES
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)