AT4G39680.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : SAP domain-containing protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
SAP domain-containing protein; FUNCTIONS IN: DNA binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cytosol, nucleus, chloroplast; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding SAP (InterPro:IPR003034); Has 10985 Blast hits to 6880 proteins in 693 species: Archae - 26; Bacteria - 1256; Metazoa - 3900; Fungi - 1267; Plants - 2321; Viruses - 541; Other Eukaryotes - 1674 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:-:18414604..18416938 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 69445.70 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.61 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.80 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 633 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSSSPFPVLD NRPIDKWKVT ELKEELKRRR LTTRGLKEEL VRRLDEALRA EQEESERINS ATVAAAEKAN QEPQMFPVTV GDRNQTTPVT PVEAAFSTET 101: TPVTAEKTPE PTQTKITTEA SAGVETTPAP VFSEPEVNAV PFASDEDEKE KVDDVRDIAG LDSSVVARDA AVVQVASSEH KSENNEPFSG LDGGDSKAQP 201: SEAVLEKSAM YNQVSEVIPV TGFEVKSDCI STDSVSNNEK IELKDNKIAD NVKLEQNVNK FQEPSTVVGE SHPMDVEEPL EQKTSVGGGD DSNAANADMI 301: KENNIIDAGD SEKLNLDRSS GDESMEDEPE TKQSESITSD DKSAKIEMLS KEESRADMDA GKGKSPENKS HPLVASDKRK LPANDQEAVG NNEPAKRRRW 401: NSNSIKVPEA QITNSATPTT TPRSTGLKRD FSRSDSSVSE DGPKERVVPP SPKEPTNSLR IDRFLRPFTL KAVQELLGKT GNVTSFWMDH IKTHCYVSYP 501: SVEEAAATRE AVYNLQWPPN GGRHLIAEFV RAEEVKEKLE APLPPQPQHQ PQAQTLSRPP PTALPPPPPL AKPPHVVERL PLPPPPPIAP EEQEPPIVTL 601: DDLFKKTKAI PRIYYLPLSE EQVAAKLAAN NNK |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)