suba logo
AT4G39670.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
cytosol 0.905
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Glycolipid transfer protein (GLTP) family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Glycolipid transfer protein (GLTP) family protein; FUNCTIONS IN: glycolipid transporter activity, glycolipid binding; INVOLVED IN: glycolipid transport; LOCATED IN: cytoplasm; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Glycolipid transfer protein, GLTP (InterPro:IPR014830); BEST Arabidopsis thaliana protein match is: Glycolipid transfer protein (GLTP) family protein (TAIR:AT2G34690.1); Has 290 Blast hits to 289 proteins in 84 species: Archae - 0; Bacteria - 0; Metazoa - 119; Fungi - 22; Plants - 133; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG4111NKTeggNOG:KOG4189EMBL:AL022605EMBL:AL161595EMBL:AY126985EMBL:BT000526EMBL:CP002687
EnsemblPlants:AT4G39670EnsemblPlants:AT4G39670.1entrez:830121Gene3D:1.10.3520.10GeneID:830121Genevisible:Q8L7U7GO:GO:0005634
GO:GO:0005737GO:GO:0017089GO:GO:0051861Gramene:AT4G39670.1hmmpanther:PTHR10219hmmpanther:PTHR10219:SF28HOGENOM:HOG000006180
IntAct:Q8L7U7InterPro:IPR014830KEGG:ath:AT4G39670OMA:HTWAIRTPaxDb:Q8L7U7Pfam:PF08718Pfam:Q8L7U7
PhylomeDB:Q8L7U7PIR:T05004PRIDE:Q8L7U7PRO:PR:Q8L7U7ProteinModelPortal:Q8L7U7Proteomes:UP000006548RefSeq:NP_195677.2
SMR:Q8L7U7STRING:3702.AT4G39670.1SUPFAM:0043785SUPFAM:SSF110004TAIR:AT4G39670UniGene:At.31076UniProt:Q8L7U7
Coordinates (TAIR10) chr4:+:18410172..18410861
Molecular Weight (calculated) 26515.30 Da
IEP (calculated) 4.30
GRAVY (calculated) -0.32
Length 229 amino acids
Sequence (TAIR10)
(BLAST)
001: MEAEVEEEEE DMFEDAVCTT QARVNTPLSV ITEAFEDLAD LVKPQRSDEI DEDELRLDDF CSACTHVSVL FNCLGFAFKF AEMEYIAKVK DLVEASKTFE
101: TLHNILDLDV EKETVKTPGS HSRNLRRVRQ GLDLIRAIFE QFLIADDYSL KDAATTAYTE VCAPFHTWAV RTAVYAGMYT LPTRDQLLLR LNETDQSVEK
201: NMRRYMEASR PIIEYIDKLY IERNIKLDW
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)