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AT4G39630.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IXGQeggNOG:ENOG410YKCAEMBL:CP002687EnsemblPlants:AT4G39630EnsemblPlants:AT4G39630.1entrez:830117GeneID:830117
Gramene:AT4G39630.1hmmpanther:PTHR37248hmmpanther:PTHR37248:SF1InParanoid:F4JW44KEGG:ath:AT4G39630OMA:GEIELKWPaxDb:F4JW44
Proteomes:UP000006548RefSeq:NP_568063.1STRING:3702.AT4G39630.1TAIR:AT4G39630UniGene:At.31078UniProt:F4JW44
Coordinates (TAIR10) chr4:-:18397749..18399263
Molecular Weight (calculated) 26613.40 Da
IEP (calculated) 4.61
GRAVY (calculated) -0.75
Length 233 amino acids
Sequence (TAIR10)
(BLAST)
001: MPKRKAKECV KLTEEDRNDE KRIRIEEKKE DFVDEEVERQ IAAIRAIRDV EIEQMLTALR LLRSYFTEEQ LHTPVLDFFK ENLPDLSISR NEETGEIELK
101: WRDENGDSFA GNENGVDMNY SILKRLSMRF TDLYSRSSLG GYDLPDNVKA NLLGTDNPQL DNLVFQGTSE NQMLPGHDAF QTPGVNGQRL SFGMTPKTLR
201: LPKAGEMMLS VHGSPLGVYK EDHNMGAINE ENS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)