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AT4G39550.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Galactose oxidase/kelch repeat superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Galactose oxidase/kelch repeat superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: Galactose oxidase/kelch repeat superfamily protein (TAIR:AT5G49000.2); Has 3208 Blast hits to 2568 proteins in 139 species: Archae - 6; Bacteria - 164; Metazoa - 1656; Fungi - 7; Plants - 1275; Viruses - 3; Other Eukaryotes - 97 (source: NCBI BLink).
Protein Annotations
BioGrid:15389eggNOG:ENOG4110X8DeggNOG:KOG1072EMBL:AK228125
EMBL:AL078620EMBL:AL161595EMBL:BT003146EMBL:CP002687
EnsemblPlants:AT4G39550EnsemblPlants:AT4G39550.1entrez:830109Gene3D:2.130.10.80
GeneID:830109Genevisible:Q9SVA3GO:GO:0016567Gramene:AT4G39550.1
hmmpanther:PTHR24414hmmpanther:PTHR24414:SF23HOGENOM:HOG000242515InParanoid:Q9SVA3
IntAct:Q9SVA3InterPro:IPR001810InterPro:IPR006652InterPro:IPR015916
KEGG:ath:AT4G39550OMA:VEWHDAVPaxDb:Q9SVA3Pfam:PF00646
Pfam:PF01344Pfam:Q9SVA3PhylomeDB:Q9SVA3PIR:T09371
PRIDE:Q9SVA3PRO:PR:Q9SVA3ProteinModelPortal:Q9SVA3Proteomes:UP000006548
RefSeq:NP_195665.1SMART:SM00256SMART:SM00612SMR:Q9SVA3
SUPFAM:0052715SUPFAM:SSF81383TAIR:AT4G39550UniGene:At.31086
UniPathway:UPA00143UniProt:Q9SVA3
Coordinates (TAIR10) chr4:-:18380681..18381859
Molecular Weight (calculated) 44271.40 Da
IEP (calculated) 9.53
GRAVY (calculated) -0.37
Length 392 amino acids
Sequence (TAIR10)
(BLAST)
001: MSSPEKKRKT TKKPSPTPQS TTPNPSLPDD LVVSCLARVS RLYYPTLSLV SKSFRSLIAS PDLYKTRSLL GRTESCLYVC LQEKDSDPNP RWFTLCLKPN
101: RTLTNDITEK KKKKKKKKKM SSGYVLAAIP VLHSRPAYWS GLVAVGSNIY NIGGPIDKAH SSIVSVLDCQ SHTWHEGPGM RVERRYPAAN VVEGKIYVTG
201: GCKDCSNSSN WMEVFDPRTQ TWESVSSPGA EIGGCSIHKS AVVEGEILIA NSHGLIYKPK EGRWERMKWD MDIGWVWYSY CVVENVLYYY YKGVFKWYDT
301: MARLWRDLKG VKGLPRFARC GGKMADYGGK MAVFWDKIVT SDDGCKNKMI LCAVIALERR NSEEIWGKVE WHDAVLTVPL SYEVVYALSP TV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)