suba logo
AT4G39540.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
cytosol 0.999
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi trans-Golgi network
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : shikimate kinase 2
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
shikimate kinase 2 (SK2); FUNCTIONS IN: shikimate kinase activity, ATP binding; INVOLVED IN: aromatic amino acid family biosynthetic process; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Shikimate kinase (InterPro:IPR000623); BEST Arabidopsis thaliana protein match is: shikimate kinase 1 (TAIR:AT2G21940.5); Has 7816 Blast hits to 7816 proteins in 2412 species: Archae - 26; Bacteria - 5492; Metazoa - 45; Fungi - 121; Plants - 162; Viruses - 0; Other Eukaryotes - 1970 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT4G39540-MONOMERBioCyc:ARA:GQT-916-MONOMERBioCyc:ARA:GQT-917-MONOMERBioCyc:MetaCyc:AT4G39540-MONOMERBRENDA:2.7.1.71EC:2.7.1.71eggNOG:COG0703
eggNOG:ENOG410IHYXEMBL:AK117791EMBL:AL078620EMBL:AL161595EMBL:BT005291EMBL:CP002687EnsemblPlants:AT4G39540
EnsemblPlants:AT4G39540.1EnsemblPlants:AT4G39540.2entrez:830108ExpressionAtlas:Q8GY88Gene3D:3.40.50.300GeneID:830108Genevisible:Q8GY88
GO:GO:0004765GO:GO:0005524GO:GO:0009073GO:GO:0009423GO:GO:0009507GO:GO:0019632GO:GO:0046872
gramene_pathway:2.7.1.71gramene_pathway:ARO-PWY-ARAHAMAP:MF_00109hmmpanther:PTHR21087hmmpanther:PTHR21087:SF8HOGENOM:HOG000032570InParanoid:Q8GY88
IntAct:Q8GY88InterPro:IPR000623InterPro:IPR023000InterPro:IPR027417InterPro:IPR031322KEGG:00400+2.7.1.71PaxDb:Q8GY88
PDB:3NWJPDBsum:3NWJPfam:PF01202Pfam:Q8GY88PhylomeDB:Q8GY88PIR:T09370PRIDE:Q8GY88
PRO:PR:Q8GY88PROSITE:PS01128ProteinModelPortal:Q8GY88Proteomes:UP000006548RefSeq:NP_195664.2RefSeq:NP_974715.1scanprosite:PS01128
SMR:Q8GY88STRING:3702.AT4G39540.3SUPFAM:SSF52540TAIR:AT4G39540tair10-symbols:ATSK2tair10-symbols:SK2UniGene:At.43917
UniPathway:UPA00053UniProt:Q8GY88
Coordinates (TAIR10) chr4:+:18378561..18380253
Molecular Weight (calculated) 33779.40 Da
IEP (calculated) 8.81
GRAVY (calculated) -0.43
Length 300 amino acids
Sequence (TAIR10)
(BLAST)
001: MEAATVQRFQ YSSWNDLRNF EGKPRGSLRY NTQRIKEDKR FRVVALTLDK RRDHRLRSVS DKNSSALLET GSLLHSPFDE EQQILKKKAE EVKPYLNGRS
101: MYLVGMMGSG KTTVGKIMAR SLGYTFFDCD TLIEQAMKGT SVAEIFEHFG ESVFREKETE ALKKLSLMYH QVVVSTGGGA VIRPINWKYM HKGISIWLDV
201: PLEALAHRIA AVGTGSRPLL HDDESGDTYT AALNRLSTIW DARGEAYTKA SARVSLENIT LKLGYRSVSD LTPAEIAIEA FEQVQSYLEK EDGMARPDGL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)