AT4G39380.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
BEST Arabidopsis thaliana protein match is: TSL-kinase interacting protein 1 (TAIR:AT2G36960.3); Has 80 Blast hits to 74 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 78; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:-:18309628..18311874 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 56773.40 Da | ||||||||||||||||||||||||
| IEP (calculated) | 7.74 | ||||||||||||||||||||||||
| GRAVY (calculated) | -0.71 | ||||||||||||||||||||||||
| Length | 518 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MARKKTETAT ESSKEIKAKG KFTRAKKSMK TTTKNIHQSG KHNSGKEEKY KCSAQPSSSQ EQRLIHTEDQ TQKVPVLDIH SSKDVPRSGK MKLQLFPLDA 101: HTREGLEKDG FHPYLELTLS SRKKISSVLQ RIHSKWGSSE IARGDPTLYP YDTSVLASGH KWVANSNITT GNVYEAIGAP FIFRLRYGWS SATENKTNEP 201: PSPSTPGTGT QMLGSENPLT MLSSPNQVTD TPPLENLPHD GQVESTENKI NDGSGPTLLF WDDGLTSLSI GGLLSEVSLK GNFGNHCKNS NAGNANATLW 301: EDNLTNISIG GLFSEASLQD RWHMNNEREP AHNGQSIGSI GGLLSEASIL GEGRISDCNK TWETRRAIKQ PPLPLISDSL DAFLVNQTDN RRAPCHAPLP 401: ESSHSSILDA EDTCHAFSFR KRTTITPKVH DQVSGEVEKE KQIDESNPAK PLLGSSVFNQ DSSLGLSGIK WAESRGPFDF GLSSSRKFAN GDSVSFGAVV 501: KDLQEMEPLE KKIKLQKH |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)