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AT4G39330.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.987
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26781341 (2016): plasma membrane
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:19334764 (2009): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : cinnamyl alcohol dehydrogenase 9
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
cinnamyl alcohol dehydrogenase 9 (CAD9); FUNCTIONS IN: oxidoreductase activity, zinc ion binding; INVOLVED IN: oxidation reduction; LOCATED IN: apoplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: GroES-like (InterPro:IPR011032), Polyketide synthase, enoylreductase (InterPro:IPR020843), Alcohol dehydrogenase, zinc-containing, conserved site (InterPro:IPR002328), Alcohol dehydrogenase GroES-like (InterPro:IPR013154), Alcohol dehydrogenase, C-terminal (InterPro:IPR013149), Alcohol dehydrogenase superfamily, zinc-containing (InterPro:IPR002085); BEST Arabidopsis thaliana protein match is: cinnamyl alcohol dehydrogenase homolog 2 (TAIR:AT2G21730.1); Has 37642 Blast hits to 37626 proteins in 3053 species: Archae - 776; Bacteria - 25052; Metazoa - 1249; Fungi - 2827; Plants - 2984; Viruses - 3; Other Eukaryotes - 4751 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT4G39330-MONOMERBioCyc:ARA:GQT-120-MONOMERBioGrid:15368EC:1.1.1.195eggNOG:COG1064eggNOG:KOG0023EMBL:AF370498
EMBL:AK317632EMBL:AK318747EMBL:AL050351EMBL:AL161595EMBL:AY064669EMBL:AY087363EMBL:AY302076
EMBL:CP002687EMBL:L37883EMBL:L37884EnsemblPlants:AT4G39330EnsemblPlants:AT4G39330.1entrez:830088Gene3D:3.40.50.720
Gene3D:3.90.180.10GeneID:830088Genevisible:P42734GO:GO:0008270GO:GO:0009735GO:GO:0009809GO:GO:0045551
GO:GO:0048046GO:GO:0052747hmmpanther:PTHR11695hmmpanther:PTHR11695:SF514HOGENOM:HOG000294667InParanoid:P42734IntAct:P42734
InterPro:IPR002085InterPro:IPR002328InterPro:IPR011032InterPro:IPR013149InterPro:IPR013154InterPro:IPR016040InterPro:IPR020843
KEGG:ath:AT4G39330KO:K00083OMA:ACKRSHEPANTHER:PTHR11695PaxDb:P42734Pfam:P42734Pfam:PF00107
Pfam:PF08240PhylomeDB:P42734PIR:S71179PIR:T08581PRIDE:P42734PRO:PR:P42734PROSITE:PS00059
ProteinModelPortal:P42734Proteomes:UP000006548RefSeq:NP_001031812.1RefSeq:NP_195643.1scanprosite:PS00059SMART:SM00829SMR:P42734
STRING:3702.AT4G39330.1SUPFAM:SSF50129SUPFAM:SSF51735TAIR:AT4G39330tair10-symbols:ATCAD9tair10-symbols:CAD9UniGene:At.24772
UniGene:At.67820UniGene:At.75608UniPathway:UPA00711UniProt:P42734
Coordinates (TAIR10) chr4:+:18291268..18292772
Molecular Weight (calculated) 38936.00 Da
IEP (calculated) 6.67
GRAVY (calculated) -0.08
Length 360 amino acids
Sequence (TAIR10)
(BLAST)
001: MAKSPETEHP NKVFGWGARD KSGVLSPFHF SRRDNGENDV TVKILFCGVC HTDLHTIKND WGYSYYPVVP GHEIVGIATK VGKNVTKFKE GDRVGVGVIS
101: GSCQSCESCD QDLENYCPQM SFTYNAIGSD GTKNYGGYSE NIVVDQRFVL RFPENLPSDS GAPLLCAGIT VYSPMKYYGM TEAGKHLGVA GLGGLGHVAV
201: KIGKAFGLKV TVISSSSTKA EEAINHLGAD SFLVTTDPQK MKAAIGTMDY IIDTISAVHA LYPLLGLLKV NGKLIALGLP EKPLELPMFP LVLGRKMVGG
301: SDVGGMKETQ EMLDFCAKHN ITADIELIKM DEINTAMERL AKSDVRYRFV IDVANSLSPP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)