AT4G39270.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.601 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Leucine-rich repeat protein kinase family protein | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Leucine-rich repeat protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat (InterPro:IPR001611), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat protein kinase family protein (TAIR:AT2G16250.1); Has 110613 Blast hits to 61451 proteins in 1666 species: Archae - 40; Bacteria - 5898; Metazoa - 27903; Fungi - 2307; Plants - 66902; Viruses - 93; Other Eukaryotes - 7470 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:18276874..18279710 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 94852.40 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.99 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.07 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 864 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MVVLRKTSLL VFFLFLLLLL ESTFEQQTSS LNEKSALLLL RSSLGLRSRD WPVKGNPCLN WNGIKCDQNG RVTKINISGF RRTRIGNQNP EFSVGSLVNL 101: TRLASFNASR FYLPGPIPAL FGSSLLTLEV LDLSSCSITG TIPESLTRLS HLKVLDLSKN AINGDIPLSL TSLQNLSILD LSSNSVFGSI PANIGALSKL 201: QRLNLSRNTL TSSIPPSLGD LSVLIDLDLS FNGMSGSVPS DLKGLRNLQT LVIAGNRLSG SLPPDLFSLL SKLQIIDFRG SGFIGALPSR LWSLPELKFL 301: DISGNHFSDM LPNTTVSFDS TVSMLNISGN MFYGNLTLLL TRFQVVDLSE NYFEGKIPDF VPTRASLSNN CLQGPEKQRK LSDCTLFYSK KGLTFNNFGQ 401: HEEKKSSKTS WLSHTKIVIL AAVGGSILLM LILIVLPITV SFCVRRRNRS STSNHPRGRH NGVGPLPPDE TLPSRGGVSI NFGSLGSSFT YQQLLNATKE 501: FSDSNLIKKG QSGDLFKGVL ENGVQIVVKR ISLESTKNNE AYLTELDFFS RFAHPRIIPF VGKSLESATH KFLVYKYMLN RDLPSSLFYK SNSLVDNGLR 601: SLDWITRLKI ALGVAEGLAY LHHDCSPSVV HRDIQASSIL LDDKFEVRLG SFSKACHQEN NGRPRKIARL LRLSQSSQES VPGSAATATC AYDVYCFGKI 701: LLELITGKLG ISSCKETQFK KILTEIMPYI SSQEKEPVMN ILDQSLLVDE DLLEEVWAMA IVARSCLNPK PTRRPLMRHI VQALENPLRV VREDSSESER 801: FRTTGSSRGS SSSGRIFGSW RQSVSDPVAA GTSSLLSQAE GLATGSSARG SSRGASSRRS MKDV |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)