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AT4G39240.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
peroxisome 0.976
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Galactose oxidase/kelch repeat superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Galactose oxidase/kelch repeat superfamily protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: Galactose oxidase/kelch repeat superfamily protein (TAIR:AT4G14905.2); Has 1894 Blast hits to 1751 proteins in 120 species: Archae - 10; Bacteria - 133; Metazoa - 685; Fungi - 4; Plants - 1024; Viruses - 7; Other Eukaryotes - 31 (source: NCBI BLink).
Protein Annotations
BioGrid:15360eggNOG:ENOG4110X8DeggNOG:KOG1072EMBL:AF370467
EMBL:AL050351EMBL:AL161594EMBL:AY128921EMBL:CP002687
EnsemblPlants:AT4G39240EnsemblPlants:AT4G39240.1entrez:830080Gene3D:2.130.10.80
GeneID:830080Genevisible:Q9T031Gramene:AT4G39240.1hmmpanther:PTHR24414
hmmpanther:PTHR24414:SF23HOGENOM:HOG000242515InParanoid:Q9T031IntAct:Q9T031
InterPro:IPR001810InterPro:IPR006652InterPro:IPR015916KEGG:ath:AT4G39240
OMA:SHATETPPaxDb:Q9T031Pfam:PF00646Pfam:PF01344
Pfam:Q9T031Pfscan:PS50181PhylomeDB:Q9T031PIR:T08572
PRIDE:Q9T031PRO:PR:Q9T031PROSITE:PS50181ProteinModelPortal:Q9T031
Proteomes:UP000006548RefSeq:NP_195635.1SMART:SM00256SMART:SM00612
SMR:Q9T031STRING:3702.AT4G39240.1SUPFAM:0052715SUPFAM:SSF81383
TAIR:AT4G39240UniGene:At.3308UniGene:At.71249UniProt:Q9T031
Coordinates (TAIR10) chr4:-:18269599..18270726
Molecular Weight (calculated) 42051.80 Da
IEP (calculated) 6.94
GRAVY (calculated) -0.05
Length 375 amino acids
Sequence (TAIR10)
(BLAST)
001: MPFSAASSSS VSSIAEEPPP KKQHDPSPSC SSYLLLLPDE IILNCLARLP KCYYPVISLV SKTFRRLIAS PEIYVERSLL RRTERVLYVV LRSHATETPR
101: WYTLNFKPFG NDSNNHRLVP IPSFPSIPCW GMSIVAIDSE IYVLGGCIDN ELVSTGFVVE CPSHTCRLLP SMKQARGCAA VGFFDGKLYV IGGCNPLSVN
201: WVEAFDLKTQ TWESGLGVNN VEMHDLTIRS FAIDDKIYIM DRKNSFVYDP KEGTLETDEL LDTQWSVGSC VIDGKIYTFG SKNRIWVFDP IAMVWDRLKG
301: LDDLPDKRDG SRMSNLGGNL AIMFNLEKGS TKICCTEIRL ERREGGKIWG TVLWSNIVIT LKEPSTIVRC LTVTV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)