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AT4G39235.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.868
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G05570.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J1DUeggNOG:ENOG410YS3TEMBL:BT024756EMBL:CP002687
EnsemblPlants:AT4G39235EnsemblPlants:AT4G39235.1entrez:830079GeneID:830079
Gramene:AT4G39235.1hmmpanther:PTHR33622hmmpanther:PTHR33622:SF3HOGENOM:HOG000029074
KEGG:ath:AT4G39235OMA:AENVQNEPhylomeDB:Q29Q00Proteomes:UP000006548
RefSeq:NP_568055.1TAIR:AT4G39235UniGene:At.3308UniGene:At.71249
UniProt:Q29Q00
Coordinates (TAIR10) chr4:+:18268514..18269034
Molecular Weight (calculated) 9677.50 Da
IEP (calculated) 6.78
GRAVY (calculated) -0.71
Length 86 amino acids
Sequence (TAIR10)
(BLAST)
1: METQTNQSPK PAMTSCRKKV KDDATFFEDV KDHIDDFIHA SMDEHKSCFQ KTIKKMFGLS KAVAEKQAVE AKGVESQLPL QTTVSE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)