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AT4G39210.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:19334764 (2009): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Glucose-1-phosphate adenylyltransferase family protein
Curator
Summary (TAIR10)
Encodes the large subunit of ADP-Glucose Pyrophosphorylase which catalyzes the first, rate limiting step in starch biosynthesis. The large subunit plays a regulatory role whereas the small subunit (ApS) is the catalytic isoform. Four isoforms (ApL1-4) have been identified. ApL3 is the major large subunit isoform present in inflorescences, fruits and roots.
Computational
Description (TAIR10)
APL3; CONTAINS InterPro DOMAIN/s: Glucose-1-phosphate adenylyltransferase (InterPro:IPR011831), ADP-glucose pyrophosphorylase, conserved site (InterPro:IPR005836), Nucleotidyl transferase (InterPro:IPR005835); BEST Arabidopsis thaliana protein match is: Glucose-1-phosphate adenylyltransferase family protein (TAIR:AT2G21590.2); Has 8453 Blast hits to 8443 proteins in 1715 species: Archae - 406; Bacteria - 5407; Metazoa - 11; Fungi - 12; Plants - 1700; Viruses - 0; Other Eukaryotes - 917 (source: NCBI BLink).
Protein Annotations
BRENDA:2.7.7.27EC:2.7.7.27eggNOG:COG0448eggNOG:ENOG410IMYMEMBL:AL050351EMBL:AL161594EMBL:AY059862
EMBL:BT010378EMBL:CP002687EMBL:X73364EMBL:Y18432EnsemblPlants:AT4G39210EnsemblPlants:AT4G39210.1entrez:830076
Gene3D:3.90.550.10GeneID:830076Genevisible:P55231GO:GO:0005524GO:GO:0005978GO:GO:0008878GO:GO:0009507
GO:GO:0019252Gramene:AT4G39210.1gramene_pathway:2.7.7.27gramene_pathway:PWY-622hmmpanther:PTHR22572hmmpanther:PTHR22572:SF111HOGENOM:HOG000278604
InParanoid:P55231InterPro:IPR005835InterPro:IPR005836InterPro:IPR011004InterPro:IPR011831InterPro:IPR029044iPTMnet:P55231
KEGG:00500+2.7.7.27KEGG:00520+2.7.7.27KEGG:ath:AT4G39210KO:K00975OMA:RMIDIPMPaxDb:P55231Pfam:P55231
Pfam:PF00483PhylomeDB:P55231PIR:T08569PRIDE:P55231PRO:PR:P55231PROSITE:PS00808PROSITE:PS00809
PROSITE:PS00810ProteinModelPortal:P55231Proteomes:UP000006548RefSeq:NP_195632.1SABIO-RK:P55231scanprosite:PS00808scanprosite:PS00809
scanprosite:PS00810SMR:P55231STRING:3702.AT4G39210.1SUPFAM:SSF51161SUPFAM:SSF53448TAIR:AT4G39210tair10-symbols:APL3
TIGRfam:TIGR02091TIGRFAMs:TIGR02091UniGene:At.75UniPathway:UPA00152unipathway:UPA00164UniProt:P55231
Coordinates (TAIR10) chr4:+:18260332..18263181
Molecular Weight (calculated) 58032.50 Da
IEP (calculated) 8.56
GRAVY (calculated) -0.29
Length 521 amino acids
Sequence (TAIR10)
(BLAST)
001: MDSCCNFSLG TKTVLAKDSF KNVENKFLGE KIKGSVLKPF SSDLSSKKFR NRKLRPGVAY AIATSKNAKE ALKNQPSMFE RRRADPKNVA AIILGGGDGA
101: KLFPLTKRAA TPAVPVGGCY RMIDIPMSNC INSCINKIFV LTQFNSASLN RHLARTYFGN GINFGDGFVE VLAATQTPGE AGKKWFQGTA DAVRKFLWVF
201: EDAKNRNIEN IIILSGDHLY RMNYMDFVQH HVDSKADITL SCAPVDESRA SEYGLVNIDR SGRVVHFSEK PTGIDLKSMQ TDTTMHGLSH QEAAKSPYIA
301: SMGVYCFKTE ALLKLLTWRY PSSNDFGSEI IPAAIKDHNV QGYIYRDYWE DIGTIKSFYE ANIALVEEHP KFEFYDQNTP FYTSPRFLPP TKTEKCRIVN
401: SVISHGCFLG ECSIQRSIIG ERSRLDYGVE LQDTLMLGAD SYQTESEIAS LLAEGNVPIG IGRDTKIRKC IIDKNAKIGK NVVIMNKDDV KEADRPEEGF
501: YIRSGITVVV EKATIKDGTV I
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)