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AT4G39190.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 0.621
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G21560.1); Has 5536 Blast hits to 3562 proteins in 401 species: Archae - 12; Bacteria - 497; Metazoa - 1363; Fungi - 374; Plants - 149; Viruses - 22; Other Eukaryotes - 3119 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JWHXeggNOG:ENOG41104WUEMBL:AL050351EMBL:AL161594EMBL:AY735667EMBL:CP002687EnsemblPlants:AT4G39190
EnsemblPlants:AT4G39190.1entrez:830074GeneID:830074GO:GO:0016021Gramene:AT4G39190.1hmmpanther:PTHR33640hmmpanther:PTHR33640:SF3
HOGENOM:HOG000153477KEGG:ath:AT4G39190ncoils:CoilOMA:RQIQSYQPhylomeDB:Q9T028PIR:T08567Proteomes:UP000006548
RefSeq:NP_195630.1STRING:3702.AT4G39190.1TAIR:AT4G39190TMHMM:TMhelixUniGene:At.64217UniProt:Q9T028
Coordinates (TAIR10) chr4:-:18252032..18252865
Molecular Weight (calculated) 31818.90 Da
IEP (calculated) 10.10
GRAVY (calculated) -0.84
Length 277 amino acids
Sequence (TAIR10)
(BLAST)
001: MDSFSTQKPK SRKMKKRLAK KSRVEIILDL FFRAIEIVVV LVTLAKLSYE LVVTFEDSSV ASVILANRSL AFVIGNAIVI ALIAKSGILL NQEHDPKCKS
101: NDLYEDFVLE SSRRGGFSQD EMRSGEKQSE AENEAKQSIT ENKAKENEEK QSITESRVKK SVTEKKTKRI ISEKKVKQSK PEKLTKQSTS VNREKQSEVE
201: HKDITMTIEK QNLTEKRQIQ SYQRSKSENL KVLEKSSCGR LKRSETDASA ERFDSDDELR YKIESFIARQ RRNQTDE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)