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AT4G39170.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 0.926
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Sec14p-like phosphatidylinositol transfer family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Sec14p-like phosphatidylinositol transfer family protein; FUNCTIONS IN: phosphatidylinositol transporter activity, transporter activity; INVOLVED IN: transport; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Cellular retinaldehyde-binding/triple function, C-terminal (InterPro:IPR001251), Cellular retinaldehyde-binding/triple function, N-terminal (InterPro:IPR008273), Cellular retinaldehyde binding/alpha-tocopherol transport (InterPro:IPR001071), Phosphatidylinositol transfer protein-like, N-terminal (InterPro:IPR011074); BEST Arabidopsis thaliana protein match is: Sec14p-like phosphatidylinositol transfer family protein (TAIR:AT2G21520.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XRSQeggNOG:KOG1471EMBL:AL050351EMBL:AL161594
EMBL:AY037182EMBL:AY133598EMBL:CP002687EnsemblPlants:AT4G39170
EnsemblPlants:AT4G39170.1entrez:830072ExpressionAtlas:F4JVA6Gene3D:3.40.525.10
GeneID:830072Genevisible:F4JVA6GO:GO:0000139GO:GO:0005215
GO:GO:0005886GO:GO:0015031hmmpanther:PTHR23324hmmpanther:PTHR23324:SF43
HOGENOM:HOG000196557InParanoid:F4JVA6InterPro:IPR001071InterPro:IPR001251
InterPro:IPR011074iPTMnet:F4JVA6ncoils:CoilOMA:FAIPCFE
PaxDb:F4JVA6Pfam:F4JVA6Pfam:PF00650Pfam:PF03765
Pfscan:PS50191PIR:T08565PRIDE:F4JVA6PRINTS:PR00180
PRO:PR:F4JVA6PROSITE:PS50191ProteinModelPortal:F4JVA6Proteomes:UP000006548
RefSeq:NP_568054.1SMART:SM00516SMART:SM01100SMR:F4JVA6
STRING:3702.AT4G39170.1SUPFAM:SSF46938SUPFAM:SSF52087TAIR:AT4G39170
TMHMM:TMhelixUniGene:At.19181UniGene:At.31113UniProt:F4JVA6
Coordinates (TAIR10) chr4:+:18240887..18243621
Molecular Weight (calculated) 69606.80 Da
IEP (calculated) 8.76
GRAVY (calculated) -0.46
Length 614 amino acids
Sequence (TAIR10)
(BLAST)
001: MSGPVDRFAI PCFEGILSSD EKKERKSDFE NSEDERRTRI GSLKKKAINA STKFKHSLKK KRRKSDVRVS SVSIEDVRDV EELQAVDEFR QALVMEELLP
101: HKHDDYHMML RFLKARKFDI EKAKHMWADM IQWRKEFGTD TIIQDFQFEE IDEVLKYYPH GYHSVDKEGR PVYIERLGKV DPNKLMQVTT LDRYIRYHVK
201: EFERSFMLKF PACTIAAKKY IDSSTTILDV QGVGLKNFTK SARELITRLQ KIDGDNYPET LHQMFIINAG PGFRLLWSTV KSFLDPKTTS KIHVLGCKYQ
301: SKLLEIIDSS ELPEFLGGAC TCADQGGCML SDKGPWKNPE IVKMVLHGGA HRAKQVVKVL NSDGKVIAYA KPSYPWIKGS DTSTAESGSE AEDIVVSPKA
401: VKSYSHLRLT PVREEAKVGS GETSFAGSFA GYDEYVPMVD KAVDATWKVK PTAINRAPSK GAHMPPNVPK DHESFSARVL VTFMAFVMAI LTFFRTVSNR
501: VVTKQLPPPP SQPQIEGSAA AEEADLLNSV LKKLTELEEK IGALQSKPSE MPYEKEELLN AAVCRVDALE AELIATKKAL YEALMRQEEL LAYIDRQEAA
601: QHQKKNKRKQ MFCF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)