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AT4G39150.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.943
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:22215637 (2012): plasma membrane
  • PMID:21166475 (2011): cytosol
  • PMID:19334764 (2009): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : DNAJ heat shock N-terminal domain-containing protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
DNAJ heat shock N-terminal domain-containing protein; FUNCTIONS IN: unfolded protein binding, heat shock protein binding; INVOLVED IN: protein folding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Heat shock protein DnaJ (InterPro:IPR003095), Heat shock protein DnaJ, conserved site (InterPro:IPR018253); BEST Arabidopsis thaliana protein match is: DNAJ heat shock N-terminal domain-containing protein (TAIR:AT2G21510.1); Has 22737 Blast hits to 22610 proteins in 3244 species: Archae - 169; Bacteria - 9228; Metazoa - 3910; Fungi - 2127; Plants - 2302; Viruses - 18; Other Eukaryotes - 4983 (source: NCBI BLink).
Protein Annotations
eggNOG:COG2214eggNOG:KOG0691EMBL:AL050351EMBL:AL161594EMBL:AY065033EMBL:AY093743EMBL:CP002687
EnsemblPlants:AT4G39150EnsemblPlants:AT4G39150.1EnsemblPlants:AT4G39150.2entrez:830070Gene3D:1.10.287.110GeneID:830070GO:GO:0005829
Gramene:AT4G39150.1Gramene:AT4G39150.2hmmpanther:PTHR24078hmmpanther:PTHR24078:SF219HOGENOM:HOG000186929InterPro:IPR001623InterPro:IPR018253
InterPro:IPR026894KEGG:ath:AT4G39150ncoils:CoilOMA:KESYDKYPfam:PF00226Pfam:PF14308Pfscan:PS50076
PhylomeDB:Q9T024PIR:T08563PRINTS:PR00625PROSITE:PS00636PROSITE:PS50076Proteomes:UP000006548RefSeq:NP_001190960.1
RefSeq:NP_195626.1scanprosite:PS00636SMART:SM00271SMR:Q9T024STRING:3702.AT4G39150.1SUPFAM:SSF46565TAIR:AT4G39150
UniGene:At.28281UniProt:Q9T024
Coordinates (TAIR10) chr4:-:18233651..18235740
Molecular Weight (calculated) 38463.90 Da
IEP (calculated) 7.69
GRAVY (calculated) -0.50
Length 345 amino acids
Sequence (TAIR10)
(BLAST)
001: MVKESEYYDI LGVKIDASGA EIKKAYYVQA RQVHPDKNPG DPQAAKNFQI LGEAYQVLGD PEKRTAYDKY GKEGVQQDAM VDPAAVFGML FGSELFEDYV
101: GQLALASAAS IDAELESYEP EIRKQMLQEK IKAIQKDRVD KLVTTLKIKL EPFVEGQTDE FVNWATAEAK RLSTAGFGEA MLHTVGYIYT RKAAKELGKD
201: KRFMKVPFLA EWVRDKGHQV KSQVMAASGA VNLLLLQDEV SKLNQGENKE ENIQKAIEAK KDAMLQSLWQ INVVDIESTL SRVCQAVLKD PSVSKDVLRA
301: RARGLRKLGN VFQGSKKAYS RENSLRHEEE TGVKVHTGDS SKPAT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)