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AT4G39100.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein
Curator
Summary (TAIR10)
Putative transcription factor containing a PHD finger and BAH motif, required for normal development
Computational
Description (TAIR10)
short life (SHL1); CONTAINS InterPro DOMAIN/s: Zinc finger, PHD-type, conserved site (InterPro:IPR019786), Zinc finger, PHD-type (InterPro:IPR001965), Bromo adjacent homology (BAH) domain (InterPro:IPR001025), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Zinc finger, PHD-finger (InterPro:IPR019787); BEST Arabidopsis thaliana protein match is: PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (TAIR:AT4G22140.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:NOG303903EMBL:AF277453EMBL:AL035679EMBL:AL161594EMBL:AY050934EMBL:AY079396EMBL:AY088603
EMBL:CP002687EnsemblPlants:AT4G39100EnsemblPlants:AT4G39100.1entrez:830065ExpressionAtlas:Q9FEN9Gene3D:3.30.40.10GeneID:830065
GO:GO:0000785GO:GO:0000976GO:GO:0003682GO:GO:0003700GO:GO:0005634GO:GO:0005677GO:GO:0006342
GO:GO:0006351GO:GO:0006355GO:GO:0008270GO:GO:0009791GO:GO:0009908GO:GO:0016568GO:GO:0031507
GO:GO:0035064GO:GO:0035067GO:GO:2000028hmmpanther:PTHR12505hmmpanther:PTHR12505:SF25HOGENOM:HOG000264809IntAct:Q9FEN9
InterPro:IPR001025InterPro:IPR001965InterPro:IPR011011InterPro:IPR013083InterPro:IPR019786InterPro:IPR019787OMA:HPACIGM
Pfam:PF00628Pfam:PF01426Pfscan:PS50016Pfscan:PS51038PhylomeDB:Q9FEN9PIR:H85462PIR:T06070
PROSITE:PS01359PROSITE:PS50016PROSITE:PS51038ProteinModelPortal:Q9FEN9Proteomes:UP000006548RefSeq:NP_568053.1scanprosite:PS01359
SMART:SM00249SMART:SM00439SMR:Q9FEN9STRING:3702.AT4G39100.1SUPFAM:SSF57903TAIR:AT4G39100tair10-symbols:SHL1
UniGene:At.47993UniGene:At.70103UniProt:Q9FEN9
Coordinates (TAIR10) chr4:-:18218298..18220134
Molecular Weight (calculated) 26123.50 Da
IEP (calculated) 8.32
GRAVY (calculated) -0.97
Length 228 amino acids
Sequence (TAIR10)
(BLAST)
001: MPKQKAPRKQ LKSYKLKHIN KSIQEGDAVL MRSSEPGKPS YVARVEAIET DARGSHAKVR VRWYYRPEES IGGRRQFHGA KEVFLSDHFD FQSADTIEGK
101: CKVHSFSSYT KLDSVGNDDF FCRFEYNSTT GAFDPDRVTV FCKCEMPYNP DDLMVQCEEC SEWFHPSCIG TTIEEAKKPD NFYCEECSPQ QQNLHNSNST
201: SNNRDAKVNG KRSLEVTKSK NKHTKRPG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)