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AT4G39090.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.500
vacuole 0.500
ASURE: nucleus,vacuole
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28155257 (2017): extracellular region plant-type cell wall
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25587034 (2015): cytosol
  • PMID:19334764 (2009): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Papain family cysteine protease
Curator
Summary (TAIR10)
Similar to cysteine proteinases, induced by desiccation but not abscisic acid. Required for RRS1-R mediated resistance against Ralstonia solanacearum. Interacts with the R. solanacearum type III effector PopP2. RD19 associates with PopP2 to form a nuclear complex that is required for activation of the RRS1-R–mediated resistance response.
Computational
Description (TAIR10)
RESPONSIVE TO DEHYDRATION 19 (RD19); CONTAINS InterPro DOMAIN/s: Peptidase C1A, papain (InterPro:IPR013128), Proteinase inhibitor I29, cathepsin propeptide (InterPro:IPR013201), Peptidase C1A, papain C-terminal (InterPro:IPR000668), Peptidase, cysteine peptidase active site (InterPro:IPR000169); BEST Arabidopsis thaliana protein match is: Papain family cysteine protease (TAIR:AT2G21430.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:COG4870eggNOG:KOG1542EMBL:AK226399EnsemblPlants:AT4G39090EnsemblPlants:AT4G39090.1entrez:830064ExpressionAtlas:Q0WWF3
GeneID:830064GO:GO:0008234Gramene:AT4G39090.1hmmpanther:PTHR12411hmmpanther:PTHR12411:SF338InterPro:IPR000169InterPro:IPR000668
InterPro:IPR013128InterPro:IPR013201InterPro:IPR025660InterPro:IPR025661KEGG:ath:AT4G39090KO:K01373merops:C01.022
merops:C01.081OMA:LPINAFRPANTHER:PTHR12411PaxDb:Q0WWF3Pfam:P43296Pfam:PF00112Pfam:PF08246
PhylomeDB:Q0WWF3PRIDE:Q0WWF3PRINTS:PR00705PROSITE:PS00139PROSITE:PS00639PROSITE:PS00640ProteinModelPortal:P43296
ProteinModelPortal:Q0WWF3RefSeq:NP_568052.1scanprosite:PS00139scanprosite:PS00639scanprosite:PS00640SMART:SM00645SMART:SM00848
SMR:Q0WWF3STRING:3702.AT4G39090.1SUPFAM:SSF54001TAIR:AT4G39090tair10-symbols:RD19tair10-symbols:RD19AUniGene:At.2850
UniGene:At.74924UniProt:P43296UniProt:Q0WWF3
Coordinates (TAIR10) chr4:-:18215826..18217326
Molecular Weight (calculated) 40420.70 Da
IEP (calculated) 7.19
GRAVY (calculated) -0.31
Length 368 amino acids
Sequence (TAIR10)
(BLAST)
001: MDRLKLYFSV FVLSFFIVSV SSSDVNDGDD LVIRQVVGGA EPQVLTSEDH FSLFKRKFGK VYASNEEHDY RFSVFKANLR RARRHQKLDP SATHGVTQFS
101: DLTRSEFRKK HLGVRSGFKL PKDANKAPIL PTENLPEDFD WRDHGAVTPV KNQGSCGSCW SFSATGALEG ANFLATGKLV SLSEQQLVDC DHECDPEEAD
201: SCDSGCNGGL MNSAFEYTLK TGGLMKEEDY PYTGKDGKTC KLDKSKIVAS VSNFSVISID EEQIAANLVK NGPLAVAINA GYMQTYIGGV SCPYICTRRL
301: NHGVLLVGYG AAGYAPARFK EKPYWIIKNS WGETWGENGF YKICKGRNIC GVDSMVSTVA ATVSTTAH
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)