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AT4G39040.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : RNA-binding CRS1 / YhbY (CRM) domain protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RNA-binding CRS1 / YhbY (CRM) domain protein; FUNCTIONS IN: RNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA-binding, CRM domain (InterPro:IPR001890); BEST Arabidopsis thaliana protein match is: RNA-binding CRS1 / YhbY (CRM) domain protein (TAIR:AT2G21350.1); Has 7881 Blast hits to 5506 proteins in 1409 species: Archae - 38; Bacteria - 2320; Metazoa - 2599; Fungi - 454; Plants - 297; Viruses - 197; Other Eukaryotes - 1976 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IYSPeggNOG:ENOG410Y53MEMBL:AK118512EMBL:AL035679
EMBL:AL161594EMBL:BT005289EMBL:CP002687EnsemblPlants:AT4G39040
EnsemblPlants:AT4G39040.1entrez:830059ExpressionAtlas:Q9SVI9Gene3D:3.30.110.60
GeneID:830059GO:GO:0003723GO:GO:0009507Gramene:AT4G39040.1
hmmpanther:PTHR31846hmmpanther:PTHR31846:SF14HOGENOM:HOG000131672InterPro:IPR001890
KEGG:ath:AT4G39040KO:K07574OMA:REYSERPPfam:PF01985
Pfscan:PS51295PhylomeDB:Q9SVI9PIR:T06064ProDom:PD010559
PROSITE:PS51295Proteomes:UP000006548RefSeq:NP_195615.1SMART:SM01103
SMR:Q9SVI9STRING:3702.AT4G39040.1SUPFAM:SSF75471TAIR:AT4G39040
UniGene:At.2846UniGene:At.66625UniProt:Q9SVI9
Coordinates (TAIR10) chr4:-:18189249..18190535
Molecular Weight (calculated) 33272.80 Da
IEP (calculated) 5.98
GRAVY (calculated) -0.89
Length 296 amino acids
Sequence (TAIR10)
(BLAST)
001: MERVTASASC SSTHLIHNLL RHPKPPSPVC LFLRPFCFSA SVSQSNHRNK PRFQSFSSKP LPCHSASLVV KSFSSIDEPD LEEDEESEDE DFSAEEYEYE
101: DEEEEDEQDS GVVVSERGIE DSEASEEVSE IGDKEEKTEN TKKKKSRGSA LKLSIKEKKE LASYAHSLGD KLKCQLVGKS GVTDSVVFSF LETLEKNELL
201: KVKIRKTSPD ELEDAVQHLE EATGSVAVGQ IGRTVILYRP SPTKMKAEAK KKEVERMSIT RRQKYANTRP TKPFRREYSE RPDGRGRRGG SRVPTA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)