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AT4G38960.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : B-box type zinc finger family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
B-box type zinc finger family protein; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, zinc ion binding; INVOLVED IN: regulation of transcription; LOCATED IN: endomembrane system, intracellular; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, B-box (InterPro:IPR000315); BEST Arabidopsis thaliana protein match is: B-box zinc finger family protein (TAIR:AT2G21320.1); Has 1845 Blast hits to 1358 proteins in 120 species: Archae - 0; Bacteria - 0; Metazoa - 19; Fungi - 0; Plants - 1736; Viruses - 0; Other Eukaryotes - 90 (source: NCBI BLink).
Protein Annotations
BioGrid:15331EMBL:AB493728EMBL:AL035679EMBL:AL161594EMBL:BT010927EMBL:BT011638EMBL:CP002687
EnsemblPlants:AT4G38960EnsemblPlants:AT4G38960.1EnsemblPlants:AT4G38960.2entrez:830051ExpressionAtlas:C0SVM5GeneID:830051Genevisible:C0SVM5
GO:GO:0005634GO:GO:0006351GO:GO:0006355GO:GO:0008270GO:GO:0010100hmmpanther:PTHR31832hmmpanther:PTHR31832:SF5
HOGENOM:HOG000239240IntAct:C0SVM5InterPro:IPR000315KEGG:ath:AT4G38960Pfam:C0SVM5Pfam:PF00643Pfscan:PS50119
PhylomeDB:C0SVM5PIR:T06056PRIDE:C0SVM5PRO:PR:C0SVM5PROSITE:PS50119ProteinModelPortal:C0SVM5Proteomes:UP000006548
RefSeq:NP_001031811.1RefSeq:NP_195607.2SMART:SM00336TAIR:AT4G38960UniGene:At.72607UniProt:C0SVM5
Coordinates (TAIR10) chr4:+:18161576..18163045
Molecular Weight (calculated) 20147.70 Da
IEP (calculated) 5.30
GRAVY (calculated) -0.56
Length 183 amino acids
Sequence (TAIR10)
(BLAST)
001: MRILCDACEN AAAIIFCAAD EAALCRPCDE KVHMCNKLAS RHVRVGLAEP SNAPCCDICE NAPAFFYCEI DGSSLCLQCD MVVHVGGKRT HGRFLLLRQR
101: IEFPGDKPKE NNTRDNLQNQ RVSTNGNGEA NGKIDDEMID LNANPQRVHE PSSNNNGIDV NNENNHEPAG LVPVGPFKRE SEK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)